序号

论文

作者

刊物名称、卷期页码

IF

1

Production of useful terpenoids by higher-fungus cell factory and synthetic biology approaches

Xiao H, Zhong JJ

Trends Biotechnol,

2016, 34(3):242-55.

12.065

2

Interfering TAL effectors of Xanthomonas oryzae
neutralize R-gene-mediated plant disease resistance

Ji Z, Ji C, Liu B, Zou L, Chen G, Yang B

Nat Commun,

2016, 7:13435.

11.329

3

An acyl transfer reaction catalyzed by an epimerase MarH

Han M, Yin HX, Zou Y, Brock NL, Huang TT, Deng ZX, Chu YW, Lin SJ

ACS Catalysis,

2016, 6(2):788-92.

9.307

4

Transformation of streptonigrin to streptonigrone: flavin reductase-mediated flavin-catalyzed concomitant oxidative decarboxylation of picolinic acid derivatives

Wo J, Kong DK, Brock NL, Xu F, Zhou XF, Deng ZX, Lin SJ

ACS Catalysis,

2016, 6(5):2831-35.

9.307

5

Theoretical studies on the mechanism of thioesterase-catalyzed macrocyclization in erythromycin biosynthesis

Chen XP, Shi T, Wang XL, Wang JT, Chen QH, Bai LQ, Zhao YL

ACS Catalysis,

2016, 6(7):4369-78.

9.307

6

A photoautotrophic platform for the sustainable production of valuable plant natural products from CO₂

Ni J, Tao F, Wang Y, Yao F, Xu P

Green Chem,

2016, 18(12):3537-48.

8.506

7

Engineering the shikimate pathway for biosynthesis of molecules with pharmaceutical activities in E. coli.

Jiang M, Zhang H

Curr Opin Biotechnol,

2016, 42:1-6.

8.314

8

Enhanced salinomycin production by adjusting the supply of polyketide extender units in Streptomyces albus

Lu CY, Zhang XJ, Jiang M, Bai LQ

Metab Eng,

2016, 35:129-37.

8.201

9

Iteratively improving natamycin production in Streptomyces gilvosporeus by a large operon-reporter based strategy.

Wang Y, Tao Z, Zheng H, Zhang F, Long Q, Deng Z, Tao M*

Metab Eng,

2016, 38:418-426.

8.201

10

Structure of the TBC1D7-TSC1 complex reveals that TBC1D7 stabilizes dimerization of the TSC1 C-terminal coiled coil region.

Gai Z, Chu W, Deng W, Li W, Li H, He A, Nellist M, Wu G*.

J Mol Cell Biol,

2016, 8(5), 411-425.

6.459

11

Elucidation of the co-metabolism of glycerol and glucose in Escherichia coli by genetic engineering, transcription profiling, and C-13 metabolic flux analysis

Yao RL, Xiong DW, Hu HB, Wakayama M, Yu WJ, Zhang XH, Shimizu K

Biotechnol Biofuels,

2016, 22;9(1):175. 

6.444

12

De novo biosynthesis of beta-valienamine in engineered Streptomyces hygroscopicus 5008

Cui L, Zhu Y, Guan XQ, Deng ZX, Bai LQ, Feng Y

ACS Synth Biol,

2016, 5(1):15-20.

6.076

13

The algicidal activity of Aeromonas sp. strain GLY-2107 against bloom-forming Microcystis aeruginosa is regulated by N-acyl homoserine lactone-mediated quorum sensing.

Guo XL, Liu XL, Wu LS, Pan JL, Yang H*.

Environ Microbiol,

2016, 18 (11):3867-3883.

5.932

14

Substrate engineering enabling fluorescence droplet entrapment for IVC-FACS-based ultrahigh-throughput screening

Ma FQ, Fischer M, Han YB, Withers SG, Feng Y, Yang GY

Anal Chem,

2016, 88(17):8587-95.

5.886

15

Strain-level dissection of the contribution of the gut microbiome to human metabolic disease

Zhang CH, Zhao LP

Genome Med,

2016, 20;8(1):41.

5.846

16

A multifunctional monooxygenase XanO4 catalyzes xanthone formation in xantholipin biosynthesis via a cryptic demethoxylation

Kong LX, Zhang WK, Chooi YH, Wang L, Cao B, Deng ZX, Chu YW, You DL

Cell Chem Biol,

2016, 23(4):508-16.

5.774

17

Rationally designed redox-sensitive protein hydrogels with tunable mechanical properties

Zhou ML, Qian ZG, Chen L, Kaplan DL, Xia XX*

Biomacromolecules,

2016, 17(11):3508-3515.

5.583

18

Passive transmembrane permeation mechanisms of monovalent ions explored by molecular dynamics simulations

Zhang HY, Xu Q*, Wang YK, Zhao TZ, Hu D, and Wei DQ*

J Chem Theory Comput,

2016, 12(10):4959-69.

5.301

19

Dynamics correlation network for allosteric switching of preQ(1) riboswitch

Wang W, Jiang C, Zhang JM, Ye W, Luo R, Chen HF

Sci Rep,

2016, 3;6:31005. 

5.228

20

Identification of (2S,3S)-beta-methyltryptophan as the real biosynthetic intermediate of antitumor agent streptonigrin

Kong DK, Zou Y, Zhang Z, Xu F, Brock NL, Zhang LP, Deng ZX, Lin SJ

Sci Rep,

2016, 5;6:20273. 

5.228

21

Diminution of the gut resistome after a gut microbiota-targeted dietary intervention in obese children

Wu GJ, Zhang CH, Wang J, Zhang F, Wang RR, Shen J, Wang LH, Pang XY, Zhang XJ, Zhao LP, Zhang MH

Sci Rep,

2016, 5;6:24030.

5.228

22

Accelerated dysbiosis of gut microbiota during aggravation of DSS-induced colitis by a butyrate-producing bacterium

Zhang QP, Wu YQ, Wang J, Wu GJ, Long WM, Xue ZS, Wang LH, Zhang XJ, Pang XY, Zhao YF, Zhao LP, Zhang CH

Sci Rep,

2016, 6;6:27572. 

5.228

23

iTRAQ-based quantitative proteomic analysis reveals potential factors associated with the enhancement of phenazine-1-carboxamide production in Pseudomonas chlororaphis P3

Jin XJ, Peng HS, Hu HB, Huang XQ, Wang W, Zhang XH

Sci Rep,

2016, 7;6:27393. 

5.228

24

Redox potential driven aeration during very-high-gravity ethanol fermentation by using flocculating yeast

Liu CG, Hao XM, Lin YH, Bai FW,

Sci Rep,

2016, 10;6:25763.

5.228

25

Dandruff is associated with the conjoined interactions between host and microorganisms

Xu ZJ, Wang ZX, Yuan C, Liu XP, Yang F, Wang T, Wang JL, Manabe K, Qin O, Wang XM, Zhang Y, Zhang MH

Sci Rep,

2016, 12;6:24877.

5.228

26

Synergistic modification induced specific recognition between histone and TRIM24 via fluctuation correlation network analysis

Zhang JM, Luo HJ, Liu H, Ye W, Luo R, Chen HF

Sci Rep,

2016, 15;6:24587.

5.228

27

Identification and characterization of chromosomal relBE toxin-antitoxin locus in Streptomyces cattleya DSM46488

Li P, Tai C, Deng ZX, Gan JH, Oggioni MR, Ou HY

Sci Rep,

2016, 18;6:32047.

5.228

28

Facile preparation of salivary extracellular vesicles for cancer proteomics

Sun Y, Xia ZJ, Shang Z, Sun KB, Niu XM, Qian LQ, Fan LY, Cao CX, Xiao H

Sci Rep,

2016, 19;6:24669. 

5.228

29

Nitrogen and hydrophosphate affects glycolipids composition in microalgae

Wang X, Shen ZY, Miao XL

Sci Rep,

2016, 21;6:30145.

5.228

30

Structural basis of the substrate preference towards CMP for a thymidylate synthase MilA involved in mildiomycin biosynthesis

Gong Z, Cheng C, Wei X, Tuling Gao, Zixin Deng, Geng Wu* & Xinyi He*

Sci Rep,

2016, 21;6:39675.

5.228

31

Long 5 ' untranslated regions regulate the RNA stability of the deep-sea filamentous phage SW1

Jian HH, Xiong L, Xu GP, Xiao X, Wang FP

Sci Rep,

2016, 22;6:21908.

5.228

32

Characterization of the relationship between polar and lateral flagellar structural genes in the deep-sea bacterium Shewanella piezotolerans WP3

Jian, H., Wang, H., Zeng, X., Xiong, L., Wang, F. and Xiao, X

Sci Rep,

2016, 22;6:39758.

5.228

33

Differential proteomic analysis of human saliva using tandem mass tags quantification for gastric cancer detection

Xiao H, Zhang Y, Kim Y, Kim S, Kim JJ, Kim KM, Yoshizawa J, Fan LY, Cao CX, Wong DTW

Sci Rep,

2016, 25;6:22165.

5.228

34

Inhabitancy of active nitrosopumilus-like ammonia-oxidizing archaea and nitrospira nitrite-oxidizing bacteria in the sponge Theonella swinhoei

Feng GF, Sun W, Zhang FL, Karthik L, Li ZY

Sci Rep,

2016, 26;6:24966.

5.228

35

Quorum sensing systems differentially regulate the production of phenazine-1-carboxylic acid in the rhizobacterium Pseudomonas aeruginosa PA1201

Sun S, Zhou L, Jin KM, Jiang HX, He YW

Sci Rep,

2016, 26;6:30352.

5.228

36

A general and efficient strategy for generating the stable enzymes

Zhang XF, Yang GY, Zhang Y, Xie Y, Withers SG, Feng Y

Sci Rep,

2016, 26;6:33797. 

5.228

37

Effects of light-emitting diodes under capped daily energy consumption with combinations of electric power and photoperiod on cultivation of Chlorella pyrenoidosa

Li JH, Bin H, Lin J, Chen F, Miao XL

Bioresour Technol,

2016, 205:126-32.

4.917

38

Optimization of pretreatment, enzymatic hydrolysis and fermentation for more efficient ethanol production by Jerusalem artichoke stalk

Li K, Qin JC, Liu CG*, Bai FW.

Bioresour Technol,

2016, 211:188.

4.917

39

Towards efficient bioethanol production from agricultural and forestry residues: exploration of unique natural microorganisms in combination with advanced strain engineering

Zhao XQ, Xiong L, Zhang MM, Bai FW

Bioresour Technol,

2016, 215:84-91.

4.917

40

DndEi exhibits helicase activity essential for DNA phosphorothioate modification and ATPase activity strongly stimulated by DNA substrate with a GAAC/GTTC motif

Zheng T, Jiang P, Cao B, Cheng QX, Kong LX, Zheng XQ, Hu QH, You DL

J Biol Chem,

2016, 291(3):1492-500.

4.258

41

Nitrogen stimulates the growth of subsurface basalt-associated microorganisms at the western flank of the mid-atlantic ridge

Zhang XX, Fang J, Bach W, Edwards KJ, Orcutt BN, Wang FP

Front Microbiol,

2016, 3;7:633.

4.165

42

The two sets of DMSO respiratory systems of Shewanella piezotolerans WP3 are involved in deep sea environmental adaptation

Xiong L, Jian HH, Zhang YX, Xiao X

Front Microbiol,

2016, 7;7:1418.

4.165

43

Regulated inflammation and lipid metabolism in colon mRNA expressions of obese germfree mice responding to Enterobacter cloacae B29 combined with the high fat diet

Yan, H., Fei, N., Wu, G., Zhang, C., Zhao, L., Zhang, M.

Front Microbiol,

2016, 7:1786.

4.165

44

An integrative genomic island affects the adaptations of piezophilic hyperthermophilic archaeon Pyrococcus yayanosii to high temperature and high hydrostatic pressure

Li, Z., Li, X., Xiao, X., and Xu, J.

Front Microbiol,

2016, 7:1972.

4.165

45

Diversity and metabolic potentials of subsurface crustal microorganisms from the western flank of the mid-atlantic ridge

Zhang XX, Fong XY, Wang FP

Front Microbiol,

2016, 18;7:363. 

4.165

46

A modified SDS-based DNA extraction method for high quality environmental DNA from seafloor environments

Natarajan VP, Zhang XX, Morono Y, Inagaki F, Wang FP

Front Microbiol,

2016, 23;7:986. 

4.165

47

DNA phosphorothioate modification plays a role in peroxides resistance in Streptomyces lividans

Dai DF, Du AQ, Xiong KL, Pu TN, Zhou XF, Deng ZX, Liang JD, He XY, Wang ZJ

Front Microbiol,

2016, 31;7:1380.

4.165

48

The RpfB-dependent quorum sensing signal turnover system is required for adaptation and virulence in rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae

Wang XY, Zhou L, Yang J, Ji GH, He YW

Mol Plant Microbe Interact,

2016, 29(3):220-30.

4.145

49

Horseradish peroxidase-assisted approach to decolorize and detoxify dye pollutants in a packed bed bioreactor

Bilal M, Iqbal H M N, Shah S Z H, Hu H, Wang W, Zhang X

J Environ Manage,

2016, 183: 836-842.

4.049

50

Identification of SENP1 inhibitors through in silico screening and rational drug design

Zhao YX, Wang ZL, Zhang JC, Zhou HC

Eur J Med Chem,

2016, 122:178-84.

3.902

51

The histone-like nucleoid structuring protein (H-NS) is a negative regulator of the lateral flagellar system in the deep-sea bacterium Shewanella piezotolerans WP3

Jian HH, Xu GP, Gai YB, Xu J, Xiao X

Appl Environ Microbiol,

2016, 82(8):2388-98.

3.823

52

Functional genome mining for metabolites encoded by large gene clusters through heterologous expression of a whole-genome bacterial artificial chromosome library in Streptomyces spp

Xu M, Wang YM, Zhao ZL, Gao GX, Huang SX, Kang QJ, He XY, Lin SJ, Pang XH, Deng ZX, Tao MF

Appl Environ Microbiol,

2016, 82(19):5795-805.

3.823

53

Xylitol production from waste xylose mother liquor containing miscellaneous sugars and inhibitors: one-pot biotransformation by Candida tropicalis and recombinant Bacillus subtilis

Wang HW, Li LJ, Zhang LB, An J, Cheng HR, Deng ZX

Microb Cell Fact,

2016, 16;15:82. 

3.744

54

Genetic engineering of Pseudomonas chlororaphis GP72 for the enhanced production of 2-hydroxyphenazine

Liu KQ, Hu HB, Wang W, Zhang XH

Microb Cell Fact,

2016, 28;15(1):131.

3.744

55

Synergistic allosteric mechanism of fructose-1,6-bisphosphate and serine for pyruvate kinase M2 via dynamics fluctuation network analysis

Yang JX, Liu H, Liu XR, Gu CB, Luo R, Chen HF

J Chem Inf Model,

2016, 56(6):1184-92.

3.657

56

Filamentous phage SW1 is active and influences the transcriptome of the host at high-pressure and low-temperature

Jian HH, Xiong L, Xu GP, Xiao X

Environ Microbiol Rep,

2016, 8(3):358-62.

3.5

57

Identification and engineering of regulation-related genes toward improved kasugamycin production

Zhu CC, Kang QJ, Bai LQ, Cheng L, Deng ZX

Appl Microbiol Biotechnol,

2016, 100(4):1811-21.

3.376

58

Chitosan beads immobilized manganese peroxidase catalytic potential for detoxification and decolorization of textile effluent

Bilal M, Asgher M, Iqbal M, Hu HB, Zhang XH

Int J Biol Macromol,

2016, 89:181-89.

3.138

59

A site-specific integrative plasmid found in Pseudomonas aeruginosa clinical isolate HS87 along with a plasmid carrying an aminoglycoside-resistant gene

Bi DX, Xie YZ, Tai C, Jiang XF, Zhang J, Harrison EM, Jia SR, Deng ZX, Rajakumar K, Ou HY

PloS One,

2016, 3;11(2):e0148367.

3.057

60

A rationally designed TNF-alpha epitope-scaffold immunogen induces sustained antibody response and alleviates collagen-induced arthritis in mice

Zhang L, Wang J, Xu AZ, Zhong CH, Lu WG, Deng L, Li RX

PloS One,

2016,

22;11(9):e0163080.

3.057

61

IL-15 signaling promotes adoptive effector T-cell survival and memory formation in irradiation-induced lymphopenia

Xu AZ, Bhanumathy KK, Wu J, Ye ZM, Freywald A, Leary SC, Li RX, Xiang J

Cell Biosci,

2016, 6;6:30.

2.883

62

An alternative approach to synthesizing galactooligosaccharides by cell-surface display of beta-galactosidase on Yarrowia lipolytica

An J, Zhang LB, Li LJ, Liu DW, Cheng HL, Wang HW, Nawaz MZ, Cheng HR, Deng ZX

J Agric Food Chem,

2016, 64(19):3819-27.

2.857

63

Highly efficient fructooligosaccharides production by an erythritol-producing yeast Yarrowia lipolytica displaying fructosyltransferase

Zhang LB, An J, Li LJ, Wang HW, Lin DW, Li N, Cheng HR, Deng ZX

J Agric Food Chem,

2016, 64(19):3828-37.

2.857

64

Integrated approach to producing high-purity trehalose from maltose by the yeast Yarrowia lipolytica displaying trehalose synthase (TreS) on the Cell Surface

Li N, Wang HW, Li LJ, Cheng HL, Liu DW, Cheng HR, Deng ZX

J Agric Food Chem,

2016, 64(31):6179-87.

2.857

65

Functional characterization of PyrG, an unusual nonribosomal peptide synthetase module from the pyridomycin biosynthetic pathway

Huang TT, Li LL, Brock NL, Deng ZX, Lin SJ

Chembiochem,

2016, 17(15):1421-25.

2.85

66

Carbon flux trapping: highly efficient production of polymer-grade d-lactic acid with a thermophilic d-lactate dehydrogenase

Li C, Tao F, Xu P

Chembiochem,

2016, 17(16):1491-94.

2.85

67

Improved prediction of michaelis constants in CYP450-mediated reactions by resilient back propagation algorithm

Dai H, Xu Q, Xiong Y, Liu WL, Wei DQ

Curr Drug Metab,

2016, 17(7):673-80.

2.847

68

Allosteric mechanism of cyclopropylindolobenzazepine inhibitors for HCV NS5B Rdrp via dynamics correlation network analysis

Rahman M, Liu H, Wadood A，Chen HF*

Mol Biosyst,

2016, 12:3280-3293.

2.829

69

Complete genome sequence of the Sporosarcina psychrophila DSM 6497, a psychrophilic bacillus strain that mediates the calcium carbonate precipitation

Yan WK, Xiao X, Zhang Y

J Biotechnol,

2016, 226:14-15.

2.667

70

Modulation of the thermostability and substrate specificity of candida rugosa lipase1 by altering the acyl-binding residue Gly414 at the alpha-helix-connecting bend

Zhang XF, Zhang Y, Yang GY, Xie Y, Xu LS, An J, Cui L, Feng Y

Enzyme Microb Technol,

2016, 82:34-41.

2.624

71

Hyper-production of large proteins of spider dragline silk MaSp2 by Escherichia coli via synthetic biology approach

Yang YX, Qian ZG, Zhong JJ, Xia XX

Process Biochem,

2016, 51(4):484-90.

2.529

72

Chalcone-benzoxaborole hybrids as novel anticancer agents

Zhang J, Yang F, Qiao Z, Zhu M, Zhou H

Bioorg Med Chem Lett,

2016, 1;26(23):5797-5801.

2.486

73

Indole methylation protects diketopiperazine configuration in the maremycin biosynthetic pathway

Lan YX, Zou Y, Huang TT, Wang XZ, Brock NL, Deng ZX, Lin SJ

SCI China Chem,

2016, 59(9):1224-28.

2.429

74

On the control of Microcystis aeruginosa and Synechococccus species using an algicidal bacterium, Stenotrophomonas F6, and its algicidal compounds cyclo-(Gly-Pro) and hydroquinone

Lin SQ, Geng MX, Liu XL, Tan J, Yang H

J Appl Phycol,

2016, 28(1):345-55.

2.372

75

Structure features of GH10 xylanase from Caldicellulosiruptor bescii: implication for its thermophilic adaption and substrate binding preference

Zhang Y, An J, Yang GY, Zhang XF, Xie Y, Chen LQ, Feng Y

Acta Biochim Biophys Sin (Shanghai),

2016, 48(10):948-57.

2.124

76

Cell factories of higher fungi for useful metabolite production

Qin H, Xu JW, Xiao JH, Tang YJ, Xiao H, Zhong JJ.

Adv Biochem Eng Biotechnol,

2016;155:199-235.

1.911

77

Global transcriptome analysis of the heat shock response of the deep-sea bacterium Shewanella piezotolerans WP3

Jian, H., Li, S., Feng, X. and Xiao, X.

Mar Genomics,

2016, 30:81-85.

1.883

78

A transcriptome resource for the deep-sea bacterium Shewanella piezotolerans WP3 under cold and high hydrostatic pressure shock stress

Mar Genomics,

2016, 30:87-91.

1.883

79

Recent progresses of simulations on passive membrane permeations in China

Zhang HY, Xu Q, Li F, Tian PC, Wang YH, Xiong Y, Zhang YH, Wei DQ

Mol Simul,

2016, 42(10):799-808.

1.678

80

Ising spins on randomly multi-branched husimi square lattice: thermodynamics and phase transition in cross-dimensional range

Huang R

Physics Letters A,

2016, 380(41):3333-39.

1.677

81

Biotechnological potential of a rhizosphere Pseudomonas aeruginosa strain producing phenazine-1-carboxylic acid and phenazine-1-carboxamide

Zhou L, Jiang HX, Sun S, Yang DD, Jin KM, Zhang W, He YW

World J Microbiol Biotechnol,

2016, 32(3):50. 

1.532

82

Biochemical characterization of translesion synthesis by Sulfolobus acidocaldarius DNA Polymerases

Peng L, Xia X, Liu XP

Chem Res Chin Univ,

2016, 32(2):226-33.

1.086

83

Characterization of protein-conjugating kinetics based on localized surface plasmon resonance of the gold nanoparticle

Ren X, Li M, Chen M, Dai YT, Shi T, Zhao YL

Spectr Lett,

2016, 49(6):434-43.

0.885

84

Prediction of type II toxin-antitoxin loci in Klebsiella pneumoniae genome sequences

Wei YQ, Bi DX, Wei DQ, Ou HY

Interdiscip Sci,

2016, 8(2):143-49.

0.853

85

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

He Y, Li M, Perumal V, Feng X, Fang J, Xie J, Sievert SM, Wang F

Nat Microbiol,

2016, 4;1(6):16035.

——

86

Structural mechanism for the arginine sensing and regulation of CASTOR1 in the mTORC1 signaling pathway

Gai Z, Wang Q, Yang C, Wang L, Deng W, Wu G.

Cell Discov,

2016, 27;2:16051.

——