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发表论文

微生物代谢国家重点实验室2011-2015年发表论文目录

主要完成人: 发表日期:2016-09-26

 

序号

 

刊物名称、卷期页码

511

Formation of the delta(18,19) double bond and bis(spiroacetal) in salinomycin is atypically catalyzed by SlnM, a methyltransferase-like enzyme.

Jiang C, Qi Z, Kang Q, Liu J, Jiang M, Bai L

Angew Chem Int Edit, 2015, 54(31):9097-100

510

Recognition and cleavage of 5-methylcytosine DNA by bacterial SRA-HNH proteins

Han T, Yamada-Mabuchi M, Zhao G, Li L, Liu G, Ou HY, Deng Z, Zheng Y, He X

Nucleic Acids Res, 2015, 43(2):1147-59.

509

Mechanisms of acid tolerance in bacteria and prospects in biotechnology and bioremediation

Liu Y, Tang H, Lin Z, Xu P

Biotechnol Adv,

2015, 33(7):1484-92.

508

Production of C3 platform chemicals from CO2 by genetically engineered cyanobacteria

Wang Y, Tao F, Ni J, Li C, Xu P

Green Chem,

2015, 17(5): 3100–3110

507

An artificial enzymatic reaction cascade for a cell-free bio-system based on glycerol

Gao C, Li Z, Zhang LJ, Wang C, Li K, Ma CQ, Xu P

Green Chem,

2015, 17(2): 804–807

506

The bamboo-eating giant panda harbors a carnivore-like gut microbiota, with excessive seasonal variations

Xue Z, Zhang W, Wang L, Hou R, Zhang M, Fei L, Zhang X, Huang H, Bridgewater LC, Jiang Y, Jiang C, Zhao L, Pang X, Zhang Z

Mbio,

2015, 6(3):e00022-15.

505

Engineering the central biosynthetic and secondary metabolic pathways of Pseudomonas aeruginosa strain PA1201 to improve phenazine-1-carboxylic acid production

Jin K, Zhou L, Jiang H, Sun S, Fang Y, Liu J, Zhang X, He YW

Metab Eng,

2015, 32:30-8.

504

Engineering validamycin production by tandem deletion of gamma-butyrolactone receptor genes in Streptomyces hygroscopicus 5008

Tan GY, Peng Y, Lu C, Bai L, Zhong JJ

Metab Eng,

2015, 28:74-81.

503

Cytotoxic T cell responses are enhanced by antigen design involving the presentation of MUC1 peptide on cholera toxin B subunit

Lu W, Qiu L, Yan Z, Lin Z, Cao M, Hu C, Wang Z, Wang J, Yu Y, Cheng X, Cao P, Li R

Oncotarget,

2015, 6(33):34537-48.

502

Identification and characterization of naturally occurring DSF-family quorum sensing signal turnover system in the phytopathogen Xanthomonas

Zhou L, Wang XY, Sun S, Yang LC, Jiang BL, He YW

Environ Microbiol,

2015, 17(11):4646-58.

501

SecReT6: a web-based resource for type VI secretion systems found in bacteria

Li J, Yao Y, Xu HH, Hao L, Deng Z, Rajakumar K, Ou HY

Environ Microbiol,

2015, 17(7):2196-202.

500

Dual thermosensitive hydrogels assembled from the conserved C-terminal domain of spider dragline silk

Qian ZG, Zhou ML, Song WW, Xia XX

Biomacromolecules,

2015, 16(11):3704-11.

499

Chemical analysis of the Chinese liquor Luzhoulaojiao by comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry

Yao F, Yi B, Shen C, Tao F, Liu Y, Lin Z, Xu P

Sci Rep,

2015, 5:9553.

498

Comparative genome analysis reveals the molecular basis of nicotine degradation and survival capacities of Arthrobacter

Yao Y, Tang H, Su F, Xu P

Sci Rep,

2015, 5:8642.

497

Complete genome sequence of hypervirulent and outbreak-associated Acinetobacter baumannii strain LAC-4: epidemiology, resistance genetic determinants and potential virulence factors

Ou HY, Kuang SN, He X, Molgora BM, Ewing PJ, Deng Z, Osby M, Chen W, Xu HH

Sci Rep,

2015, 5:8643.

496

Differential responses of gut microbiota to the same prebiotic formula in oligotrophic and eutrophic batch fermentation systems

Long W, Xue Z, Zhang Q, Feng Z, Bridgewater L, Wang L, Zhao L, Pang X

Sci Rep,

2015, 5:13469.

495

Enhancing the light-driven production of D-lactate by engineering cyanobacterium using a combinational strategy

Li C, Tao F, Ni J, Wang Y, Yao F, Xu P

Sci Rep,

2015, 5:9777.

494

A filifactor alocis-centered co-occurrence group associates with periodontitis across different oral habitats

Chen H, Liu Y, Zhang M, Wang G, Qi Z, Bridgewater L, Zhao L, Tang Z, Pang X

Sci Rep,

2015, 5:9053.

493

Functional identification of a novel gene, moaE, for 3-Succinoylpyridine degradation in Pseudomonas putida S16

Jiang Y, Tang H, Wu G, Xu P

Sci Rep,

2015, 5:13464.

492

In vitro analysis of phosphorothioate modification of DNA reveals substrate recognition by a multiprotein complex

Cao B, Zheng X, Cheng Q, Yao F, Zheng T, Ramesh Babu I, Zhou H, Dedon P, You D

Sci Rep,

2015, 5:12513.

491

Mimicking a natural pathway for de novo biosynthesis: natural vanillin production from accessible carbon sources

Ni J, Tao F, Du H, Xu P

Sci Rep,

2015, 5:13670.

490

Modulation of gut microbiota by berberine and metformin during the treatment of high-fat diet-induced obesity in rats

Zhang X, Zhao Y, Xu J, Xue Z, Zhang M, Pang X, Zhang X, Zhao L

Sci Rep,

2015, 5:14405.

489

The multiple DSF-family QS signals are synthesized from carbohydrate and branched-chain amino acids via the FAS elongation cycle

Zhou L, Yu Y, Chen X, Diab AA, Ruan L, He J, Wang H, He YW

Sci Rep,

2015, 5:13294.

488

A novel crosstalk between TLR4- and NOD2-mediated signaling in the regulation of intestinal inflammation

Kim H, Zhao Q, Zheng H, Li X, Zhang T, Ma X

Sci Rep,

2015, 5:12018.

487

Synergistic algicidal effect and mechanism of two diketopiperazines produced by Chryseobacterium sp. strain GLY-1106 on the harmful bloom-forming Microcystis aeruginosa

Guo X, Liu X, Pan J, Yang H

Sci Rep,

2015, 5:14720.

486

Sustainable production of valuable compound 3-succinoyl-pyridine by genetically engineering Pseudomonas putida using the tobacco waste.

Wang WW, Xu P, and Tang HZ

Sci Rep,

2015, 5:16411.

485

Characterization of pseudooxynicotine amine oxidase of Pseudomonas putida S16 that is crucial for nicotine degradation.

Hu HY, Wang WW, Tang HZ, and Xu P

Sci Rep,

2015, 5:17770.

484

A functional 4-hydroxybenzoate degradation pathway in the
phytopathogen
Xanthomonas
campestris
is required for full
pathogenicity

Wang JY, Zhou L, Chen B, Sun S, Zhang W, Ming Li M, Tang HZ,
Jiang BL, Tang JL & He YW

Sci Rep,

2015, 5:18456.

483

Real-time ArcGIS and heterotrophic plate count based chloramine disinfectant control in water distribution system

Bai X, Zhi X, Zhu H, Meng M, Zhang M

Water Res,

2015, 68:812-20.

482

Sparsomycin biosynthesis highlights unusual module architecture and processing mechanism in non-ribosomal peptide synthetase

Rui Z, Huang W, Xu F, Han M, Liu X, Lin S, Zhang W

ACS Chem Biol,

2015, 10(8):1765-9.

481

Mapping the resistance-associated mobilome of a carbapenem-resistant Klebsiella pneumoniae strain reveals insights into factors shaping these regions and facilitates generation of a 'resistance-disarmed' model organism

Bi D, Jiang X, Sheng ZK, Ngmenterebo D, Tai C, Wang M, Deng Z, Rajakumar K, Ou HY

J Antimicrob Chemother,

2015, 70(10):2770-4.

480

Crystal structure of PnpCD, a two-subunit Hydroquinone 1,2-Dioxygenase, reveals a novel structural class of Fe2+-dependent dioxygenases

Liu S, Su T, Zhang C, Zhang WM, Zhu D, Su J, Wei T, Wang K, Huang Y, Guo L, Xu S, Zhou NY, Gu L

J Biol Chem,

2015, 290(40):24547-60.

479

Multicomponent kinetic analysis and theoretical studies on the phenolic intermediates in the oxidation of eugenol and isoeugenol catalyzed by laccase

Qi YB, Wang XL, Shi T, Liu S, Xu ZH, Li X, Shi X, Xu P, Zhao YL

Phys Chem Chem Phys, 2015, 17(44):29597-607.

478

A facile method for controlling the reaction equilibrium of sphingolipid ceramide N-deacylase for lyso-glycosphingolipid production

Huang FT, Han YB, Feng Y, Yang GY

J Lipid Res,

2015, 56(9):1836-42.

477

Regulation of DNA phosphorothioate modifications by the transcriptional regulator DptB in Salmonella

Cheng Q, Cao B, Yao F, Li J, Deng Z, You D

Mol Microbiol,

2015, 97(6):1186-94.

476

Reciprocating free-flow isoelectric focusing device for preparative separation of proteins

Kong FZ, Yang Y, Wang Y, Li GQ, Li S, Xiao H, Fan LY, Liu SR, Cao CX

J Chromatogr A,

2015 27, 1422:318-24.

475

Target protein separation and preparation by free-flow electrophoresis coupled with charge-to-mass ratio analysis

Shen QY, Guo CG, Yan J, Zhang Q, Xie HY, Jahan S, Fan LY, Xiao H, Cao CX

J Chromatogr A,

2015, 1397:73-80.

474

A highly efficient three-phase single drop microextraction technique for sample preconcentration

Jahan S, Xie H, Zhong R, Yan J, Xiao H, Fan L, Cao C

Analyst,

2015, 140(9):3193-200.

473

The drinking water treatment process as a potential source of affecting the bacterial antibiotic resistance

Bai XH, Ma XL, Xu FM, Li J, Zhang H, Xiao X

Sci Total Environ,

2015, 533:24-31.

472

Actinomycetes from the South China Sea sponges: isolation, diversity, and potential for aromatic polyketides discovery

Sun W, Zhang F, He L, Karthik L, Li Z

Front Microbiol,

2015, 6:1048.

471

Bacteria in the injection water differently impacts the bacterial communities of production wells in high-temperature petroleum reservoirs

Ren H, Xiong S, Gao G, Song Y, Cao G, Zhao L, Zhang X

Front Microbiol,

2015, 6:505.

470

Interactions of Dnd proteins involved in bacterial DNA phosphorothioate modification

Xiong W, Zhao G, Yu H, He X

Front Microbiol,

2015, 6:1139.

469

Recombinant expression library of Pyrococcus furiosus constructed by high-throughput cloning: a useful tool for functional and structural genomics

Yuan H, Peng L, Han Z, Xie JJ, Liu XP

Front Microbiol,

2015, 6:943.

468

The regulatory function of LexA is temperature-dependent in the deep-sea bacterium Shewanella piezotolerans WP3

Jian H, Xiong L, He Y, Xiao X

Front Microbiol,

2015, 6:627.

467

Metagenome and metatranscriptome revealed a highly active and intensive Sulfur cycle in an oil-Immersed hydrothermal chimney in Guaymas Basin

He Y, Feng XY, Fang J, Zhang Y, Xiao X

Front Microbiol,

2015, 6:1236.

466

Test and evaluation of ff99IDPs force field for intrinsically disordered proteins

Ye W, Ji D, Wang W, Luo R, Chen HF

J Chem Inf Model,

2015, 55(5):1021-9.

465

The host genotype and environment affect strain types of Bifidobacterium longum subsp. longum Inhabiting the Intestinal tracts of twins

Zhang M, Hang X, Tan J, Yang H

Appl Environ Microb,

2015, 81(14):4774-81.

464

Identification of a specific maleate hydratase in the direct hydrolysis route of the gentisate pathway

Liu K, Xu Y, Zhou NY

Appl Environ Microb,

2015, 81(17):5753-60.

463

molecular mechanism of nicotine degradation by a newly isolated strain, Ochrobactrum sp. strain SJY1

Yu H, Tang H, Zhu X, Li Y, Xu P

Appl Environ Microb,

2015, 81(1):272-81.

462

Molybdenum-containing nicotine hydroxylase genes in a nicotine
degradation pathway that is a variant of the pyridine and
pyrrolidine pathways

Yu H, Tang H, Li Y, Xu P

Appl Environ Microb,

2015, 81(24):8330-8.

461

pSW2, a novel low-temperature-inducible gene expression vector based on a filamentous phage of the deep-sea bacterium Shewanella piezotolerans WP3

Yang XW, Jian HH, Wang FP

Appl Environ Microb,

2015, 81(16):5519-26.

460

Quantitative proteomic analysis of microdissected oral epithelium for cancer biomarker discovery

Xiao H, Langerman A, Zhang Y, Khalid O, Hu S, Cao CX, Lingen MW, Wong DT

Oral Oncol,

2015, 51(11):1011-9.

459

A tunable isoelectric focusing via moving reaction boundary for two-dimensional gel electrophoresis and proteomics

Guo CG, Shang Z, Yan J, Li S, Li GQ, Liu RZ, Qing Y, Fan LY, Xiao H, Cao CX

Talanta,

2015, 137:197-203.

458

Accumulation of yellow Monascus pigments by extractive fermentation in nonionic surfactant micelle aqueous solution

Xiong X, Zhang X, Wu Z, Wang Z

Appl Microbiol Biot,

2015, 99(3):1173-80.

457

Algicidal activity of Bacillus sp. Lzh-5 and its algicidal compounds against Microcystis aeruginosa

Li Z, Geng M, Yang H

Appl Microbiol Biot,

2015, 99(2):981-90.

456

Comprehensive characterization of sphingolipid ceramide N-deacylase for the synthesis and fatty acid remodeling of glycosphingolipids

Han YB, Wu L, Rich JR, Huang FT, Withers SG, Feng Y, Yang GY

Appl Microbiol Biot,

2015, 99(16):6715-26.

455

Crude oil degradation by bacterial consortia under four different redox and temperature conditions

Xiong S, Li X, Chen J, Zhao L, Zhang H, Zhang X

Appl Microbiol Biot,

2015, 99(3):1451-61.

454

Engineered biosynthesis of pimaricin derivatives with improved antifungal activity and reduced cytotoxicity

Qi Z, Kang Q, Jiang C, Han M, Bai L

Appl Microbiol Biot,

2015, 99(16):6745-52.

453

Functional gene-based discovery of phenazines from the actinobacteria associated with marine sponges in the South China Sea

Karuppiah V, Li Y, Sun W, Feng G, Li Z

Appl Microbiol Biot,

2015, 99(14):5939-50.

452

Metabolic engineering of Escherichia coli to enhance acetol production from glycerol

Yao R, Liu Q, Hu H, Wood TK, Zhang X

Appl Microbiol Biot,

2015, 99(19):7945-52.

451

Positive and negative regulation of GlnR in validamycin A biosynthesis by binding to different loci in promoter region

Qu S, Kang Q, Wu H, Wang L, Bai L

Appl Microbiol Biot,

2015, 99(11):4771-83.

450

Relationship between acid tolerance and cell membrane in Bifidobacterium, revealed by comparative analysis of acid-resistant derivatives and their parental strains grown in medium with and without Tween 80

Yang X, Hang X, Zhang M, Liu X, Yang H

Appl Microbiol Biot,

2015, 99(12):5227-36.

449

Destabilization of alzheimer's abeta42 protofibrils with a novel drug candidate wgx-50 by molecular dynamics Simulations

Fan HM, Gu RX, Wang YJ, Pi YL, Zhang YH, Xu Q, Wei DQ

J Phys Chem B,

2015, 119(34):11196-202.

448

Recognition mechanism between Lac repressor and DNA with correlation network analysis

Xu L, Ye W, Jiang C, Yang J, Zhang J, Feng Y, Luo R, Chen HF

J Phys Chem B,

2015,119(7):2844-56.

447

Theoretical study on the relationship between Rp-phosphorothioation and base-step in S-DNA: based on energetic and structural analysis

Chen L, Wang XL, Shi T, Wu T, Deng Z, Zhao YL

J Phys Chem B,

2015, 119(2):474-81.

446

Active site loop conformation regulates promiscuous activity in a lactonase from Geobacillus kaustophilus HTA426

Zhang Y, An J, Yang GY, Bai A, Zheng B, Lou Z, Wu G, Ye W, Chen HF, Feng Y, Manco G

PloS One,

2015, 10(2):e0115130.

445

Elucidation of enzymatic mechanism of phenazine biosynthetic protein PhzF using QM/MM and MD simulations

Liu F, Zhao YL, Wang X, Hu H, Peng H, Wang W, Wang JF, Zhang X

PloS One,

2015, 10(9):e0139081.

444

Identification of the lomofungin biosynthesis gene cluster and associated flavin-dependent monooxygenase gene in Streptomyces lomondensis S015

Zhang C, Sheng C, Wang W, Hu H, Peng H, Zhang X

PloS One,

2015, 10(8):e0136228.

443

Mixed wastewater coupled with CO2 for microalgae culturing and nutrient removal

Yao L, Shi J, Miao X

PloS One,

2015, 10(9):e0139117.

442

Revealing the binding mode between respiratory syncytial virus fusion protein and benzimidazole-based inhibitors

Ji D, Ye W, Chen H

Mol Biosyst,

2015, 11(7):1857-66.

441

Preparation and characterization of yellow Monascus pigments

Zhong SJ, Zhang XH, Wang ZL.

Sep Purif Technol,

2015, 150:139-144

440

Design of hyperthermophilic lipase chimeras by key motif-directed recombination

Zhou X, Gao L, Yang G, Liu D, Bai A, Li B, Deng Z, Feng Y

Chembiochem.

2015, 16(3):455-62.

439

Kangiella profundi sp. nov., isolated from deep-sea sediment

Xu FD, Li XG, Xiao X, Xu J

Int J Syst Evol Microbiol. 2015, 65(7):2315-9.

438

Selectivity mechanism of ATP-competitive Inhibitors for PKB and PKA

Wu K, Pang J, Song D, Zhu Y, Wu C, Shao T, Chen H

Chem Biol Drug Des,

2015, 86(1):9-18.

437

Differences in acid tolerance between Bifidobacterium breve BB8 and its acid-resistant derivative B. breve BB8dpH, revealed by RNA-sequencing and physiological analysis

Yang X, Hang X, Tan J, Yang H

Anaerobe,

2015, 33:76-84.

436

Characterization of a novel thermostable patatin-like protein from a Guaymas basin metagenomic library

Fu L, He Y, Xu F, Ma Q, Wang F, Xu J

Extremophiles,

2015, 19(4):829-40.

435

(+)Terrein inhibits human hepatoma Bel7402 proliferation through cell cycle arrest

Zhang F, Mijiti M, Ding W, Song J, Yin Y, Sun W, Li Z

Oncol Rep,

2015, 33(3):1191-200.

434

Antitumor and antimetastatic activities of chloroform extract of medicinal mushroom Cordyceps taii in mouse models

Liu RM, Zhang XJ, Liang GY, Yang YF, Zhong JJ, Xiao JH

Bmc Complem Altern M,

2015, 15:216.

433

Erratum to: 'Antitumor and antimetastatic activities of chloroform extract of medicinal mushroom Cordyceps taii in mouse models'

Liu RM, Zhang XJ, Liang GY, Yang YF, Zhong JJ, Xiao JH

Bmc Complem Altern M,

2015, 15:284.

432

The alpha7 nAChR selective agonists as drug candidates for Alzheimer's disease

Fan H, Gu R, Wei D

Adv Exp Med Biol,

2015, 827:353-65.

431

An application of QM/MM simulation: the second protonation of cytochrome P450

Lian P, Wei D

Adv Exp Med Biol,

2015, 827:311-24.

430

Applications of rare event dynamics on the free energy calculations for membrane protein systems

Wang Y, Gu R, Fan H, Ulmschneider J, Wei D

Adv Exp Med Biol,

2015, 827:71-82.

429

Binding induced intrinsically disordered protein folding with molecular dynamics simulation

Chen H

Adv Exp Med Biol,

2015, 827:111-21.

428

Bioinformatics tools for discovery and functional analysis of single nucleotide polymorphisms

Li L, Wei D

Adv Exp Med Biol,

2015, 827:287-310.

427

Drug inhibition and proton conduction mechanisms of the influenza a M2 proton channel

Gu R, Liu LA, Wei D

Adv Exp Med Biol,

2015, 827:205-26.

426

Exploring the ligand-protein networks in traditional chinese medicine: current databases, methods and applications

Zhao M, Wei D

Adv Exp Med Biol,

2015, 827:227-57.

425

Human cytochrome P450 and personalized medicine

Chen Q, Wei D

Adv Exp Med Biol,

2015, 827:341-51.

424

Introduction to structural bioinformatics

Xu Q, Dai H, Zhao T, Wei D

Adv Exp Med Biol,

2015, 827:1-7.

423

Recent progress on structural bioinformatics research of cytochrome P450 and its impact on drug discovery

Zhang T, Wei D

Adv Exp Med Biol,

2015, 827:327-39.

422

A new alkaline lipase obtained from the metagenome of marine sponge Ircinia sp

Su J, Zhang F, Sun W, Karuppiah V, Zhang G, Li Z, Jiang Q

World J Microb Biot,

2015, 31(7):1093-102.

421

Two nucleoside receptors from Streptomyces coelicolor: expression of the genes and characterization of the recombinant proteins

Li F, Liang J, Wang W, Zhou X, Deng Z, Wang Z

Protein Expres Purif,

2015, 109:40-6.

420

Phylogenetic diversity of sulphate-reducing Desulfovibrio associated with three South China Sea sponges

Zhang D, Sun W, Feng G, Zhang F, Anbuchezhian R, Li Z, Jiang Q

Lett Appl Microbiol,

2015, 60(5):504-12.

419

Overexpression of afsR and optimization of metal chloride to improve lomofungin production in Streptomyces lomondensis S015

Wang W, Wang H, Hu H, Peng H, Zhang X

J Microbiol Biotechn

2015, 25(5):672-80.

418

[An efficient genetic knockout system based on linear DNA fragment homologous recombination for halophilic archaea]

Wang XL, Jiang C, Liu JH, Liu XP

Yi chuan,

2015, 37(4):388-95.

417

Isolation and structural identification of two bioactive phenazines from
Streptomyces griseoluteus P510

Luo Q, Hu HB, Peng HS, Zhang XH, Wang W

Chinese J Chem Eng,

2015, 699–703

416

Detection of erm(X)- mediated antibiotic resistance in Bifidobacterium longum subsp. longum.

Luo C, Hang X, Liu X, Zhang M, Yang X, Yang H.

Ann Microbiol,

2015, 65:1985–1991

415

Improved feature-based prediction of SNPs in human cytochrome P450 enzymes

Li L, Xiong Y, Zhang ZY, Guo Q, Xu Q, Liow HH, Zhang YH, Wei DQ

Interdiscip Sci,

2015, 7(1):65-77.

414

Molecular dynamics simulation studies of the wild type and E92Q/N155H mutant of Elvitegravir-resistance HIV-1 integrase

Chen Q, Cheng X, Wei D, Xu Q

Interdiscip Sci,

2015, 7(1):36-42.

413

Crystallization and preliminary X-ray analysis of the type IV restriction endonuclease ScoMcrA from Streptomyces coelicolor, which cleaves both Dcm-methylated DNA and phosphorothioated DNA

Liu G, Zhang Z, Zhao G, Deng Z, Wu G, He X

Acta Crystallogr F,

2015, 71(Pt 1):57-60.

412

Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences

Cao B, Chen C, DeMottMS, Cheng QX, Clark TA, Xiong XL, Zheng XQ, Zhou XF, Deng ZX, … You DL, Wang LR,Chen S, Dedon PC

Nat Commun, 2014, 5:3591

411

Microbial lactate utilization: Enzymes, pathogenesis, and regulation

Jiang TY, Gao C, Ma CQ, Xu P

Trends Microbiol, 2014, 22(10):589-599

410

Structure of the N-glycosidase MilB in complex with hydroxymethyl CMP reveals its Arg23 specifically recognizes the substrate and controls its entry

Zhao G, Wu G, Zhang Y, Liu G, Han TS, Deng ZX, He XY

Nucleic Acids Res, 2014, 42(12):8115-8124

409

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

Meng J, Xu J, Qin D, He Y, Xiao X, Wang FP

Isme J, 2014, 8(3):650-659

408

Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways

Wang FP, Zhang Y, Chen Y, He Y, Qi J, Hinrichs KU, Zhang XX, Xiao X, Boon N

Isme J, 2014, 8(5):1069-1078

407

Biomineralization mediated by anaerobic methane-consuming cell consortia

Chen Y, Li YL, Zhou GT, Li H, Lin YT, Xiao X, Wang FP

Sci Rep, 2014, 16(4):5696

406

Green strategy from waste to value-added-chemical production: Efficient biosynthesis of 6-hydroxy-3-succinoyl-pyridine by an engineered biocatalyst

Yu H, Tang HZ, Xu P

Sci Rep, 2014, 23(4):5397

405

Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Lamellomorpha sp indicated by metagenomics

Li ZY, Wang YZ, He LM, Zheng HJ

Sci Rep, 2014, 27(4):3895

404

Genomic analysis of thermophilic Bacillus coagulans strains: Efficient producers for platform bio-chemicals

Su F, Xu P

Sci Rep, 2014, 29(4):3926

403

Hydrophobic drug-triggered self-assembly of nanoparticles from silk-elastin-like protein polymers for drug delivery

Xia XX, Wang M, Lin YA, Xu QB, Kaplan DL

Biomacromolecules, 2014, 15(3):908-914

402

Structural insights into the specific recognition of N-heterocycle biodenitrogenation-derived substrates by microbial amide hydrolases

Wu G, Chen DD, Tang HZ, Ren YL, Chen QH, Lv Y, Zhang ZY, Zhao YL, Yao YX, Xu P

Mol Microbiol, 2014, 91(5):1009-1021

401

An unusual repressor controls the expression of a crucial nicotine-degrading gene cluster in Pseudomonas putida S16

Wang LJ, Tang HZ, Yu H, Yao YX, Xu P

Mol Microbiol, 2014, 91(6):1252-1269

400

Pathological phenotypes and in vivo DNA cleavage by unrestrained activity of a phosphorothioate- based restriction system in Salmonella

Cao B, Cheng QX, Gu C, Yao F, DeMott MS, Zheng XQ, Deng ZX, Dedon PC, You DL

Mol Microbiol, 2014, 93(4):776-785

399

Efficient production of L-lactic acid using co-feeding strategy based on cane molasses/glucose carbon sources

Xu K, Xu P

Bioresour Technol, 2014, 15323-29

398

Efficient calcium lactate production by fermentation coupled with crystallization-based in situ product removal

Xu K, Xu P

Bioresour Technol, 2014, 16333-39

397

Efficient production of 2,3-butanediol from corn stover hydrolysate by using a thermophilic Bacillus licheniformis strain

Li LX, Li K, Wang K, Chen C, Gao C, Ma CQ, Xu P

Bioresour Technol, 2014, 170256-261

396

Biodiesel quality and biochemical changes of microalgae Chlorella pyrenoidosa and Scenedesmus obliquus in response to nitrate levels

Wu HQ, Miao XL

Bioresour Technol, 2014, 170421-427

395

Induction of ganoderic acid biosynthesis by Mn2+ in static liquid cultivation of Ganoderma lucidum

Xu YN, Xia XX, Zhong JJ

Biotechnol Bioeng, 2014, 111(11):2358-2365

394

New in situ capture quantitative (real-time) reverse transcription-PCR method as an alternative approach for determining inactivation of tulane virus

Wang DP, Xu SX, Yang D, Young GM, Tian P

Appl Microbiol Biotechnol, 2014, 80(7):2120-2124

393

Genetically engineered Pichia pastoris yeast for conversion of glucose to xylitol by a single-fermentation process

Cheng HR, Lv JY, Wang HW, Wang B, Li ZL, Deng ZX

Appl Microbiol Biotechnol, 2014, 98(8):3539-3552

392

Significance of agitation-induced shear stress on mycelium morphology and lavendamycin production by engineered Streptomyces flocculus

Xia X, Lin SJ, Xia XX, Cong FS, Zhong JJ

Appl Microbiol Biotechnol, 2014, 98(10):4399-4407

400

A freshwater bacterial strain, Shewanella sp. lzh-2, isolated from lake taihu and its two algicidal active substances, hexahydropyrrolo 1,2-a pyrazine-1,4-dione and 2, 3-indolinedione

Li ZH, Lin SQ, Liu XL, Tan J, Pan JL, Yang H

Appl Microbiol Biotechnol, 2014, 98(10):4737-4748

399

Marine actinobacteria associated with marine organisms and their potentials in producing pharmaceutical natural products

Valliappan K, Sun W, Li ZY

Appl Microbiol Biotechnol, 2014, 98(17):7365-7377

398

Enhanced production of validamycin A in Streptomyces hygroscopicus 5008 by engineering validamycin biosynthetic gene cluster

Zhou TC, Kim BG, Zhong JJ

Appl Microbiol Biotechnol, 2014, 98(18):7911-7922

397

Retardation signal for fluorescent determination of total protein content via rapid and sensitive chip moving reaction boundary electrophoretic titration

Wang HY, Shi YT, Yan J, Dong JY, Li S, Xiao H, Xie HY, Fan LY, Cao CX

Anal Chem, 2014, 86(6):2888-2894

396

A new strategy for highly efficient single-drop microextraction with a liquid-gas compound pendant drop

Xie HY, Yan J, Jahan S, Zhong R, Fan LY, Xiao H, Jin XQ, Cao CX

Analyst, 2014, 139(10):2545-2550

395

Characterization of an algicidal bacterium Brevundimonas J4 and chemical defense of Synechococcus sp. BN60 against bacterium J4

Lin SQ, Pan JL, Li ZH, Liu XL, Tan J,Yang H

Harmful Algae, 2014, 371-7

394

Physiological and biochemical characterization of a novel nicotine-degrading bacterium Pseudomonas geniculata N1

Liu YH, Wang LJ, Huang KM, Wang WW, Nie XL, Jiang Y, Li PP, Liu SS, Xu P, Tang HZ

PLoS One, 2014, 9(1):e84399

393

An improved single cell ultrahigh throughput screening method based on in vitro compartmentalization

Ma FQ, Xie Y, Huang C, Feng Y, Yang GY

PLoS One, 2014, 9(2):e89785

392

Reaction kinetics for the biocatalytic conversion of phenazine-1-carboxylic acid to 2-hydroxyphenazine

Chen MM, Cao HX, Peng HS, Hu HB, Wang W, Zhang XH

PLoS One, 2014, 9(6):e98537

391

Characterization of the xiamenmycin biosynthesis gene cluster in Streptomyces xiamenensis 318

Yang Y, Fu L, Zhang JL, Hu LH, Xu , Xu J

PLoS One, 2014, 9(6):e99537

390

Betaine and beet molasses enhance L-lactic acid production by Bacillus coagulans

Xu K, Xu P

PLoS One, 2014, 9(6):e100731

389

Characterization of the medium- and long-chain n-alkanes degrading Pseudomonas aeruginosa strain SJTD-1 and its alkane hydroxylase genes

Liu H, Xu J, Liang RB, Liu JH

PLoS One, 2014, 9(8):e105506

388

Mutation of a Salmonella serogroup-C1-specific gene abrogates O7-antigen biosynthesis and triggers nacl-dependent motility deficiency

Zhou XJ, Liu B, Shi CL, Shi XM

PLoS One, 2014, 9(9):e106708

387

Stratified community responses to methane and sulfate supplies in mud volcano deposits: Insights from an in vitro experiment

Zhang Y, Maignien L, Stadnitskaia A, Boeckx P, Xiao X, Boon N

PLoS One, 2014, 9(11):e113004

386

Glycerol dehydrogenase plays a dual role in glycerol metabolism and 2,3-butanediol formation in Klebsiell pneumoniae

Wang Y, Tao F, Xu P

J Biol Chem, 2014, 289(9):6080-6090

385

Enhanced enzyme kinetic stability by increasing rigidity within the active site

Xie Y, An J, Yang GY, Wu G, Zhang Y, Cui L, Feng Y

J Biol Chem, 2014, 289(11):7994-8006

384

AvrXa7-Xa7 mediated defense in rice can be suppressed by transcriptional activator-like effectors TAL6 and TAL11a from Xanthomonas oryzae pv. oryzicola

Ji ZY, Xiong L, Zou LF, Li YR, Ma WX, Liu L, Zakria M, Ji GH, Chen GY

Mol Plant-Microbe Interact, 2014, 27(9):983-995

383

Features of S-nitrosylation based on statistical analysis and molecular dynamics simulation: Cysteine acidity, surrounding basicity, steric hindrance and local flexibility

Cheng SL, Sh iT, Wang XL, Liang J, Wu HY, Xie L, Li YX, Zhao YL

Mol Biosyst, 2014, 10(10):2597-2606

382

A recombinant adenovirus expressing CFP10, ESAT6, Ag85A and Ag85B of Mycobacterium tuberculosis elicits strong antigen-specific immune responses in mice

Li W, Deng GC, Li M, Zeng J, Zhao LP, Liu XM, Wang YJ

Mol Immunol, 2014, 62(1):86-95

381

New force field on modeling intrinsically disordered proteins

Wang W, Ye W, Jiang C, Luo R, Chen HF

Chem Biol Drug Des, 2014, 84(3):253-269

380

Analysis of Streptomyces coelicolor membrane proteome using two-dimensional native/native and native/sodium dodecyl sulfate gel electrophoresis

Li F, Liang J, Wang W, Zhou X, Deng Z, Wang Z

Anal Biochem, 2014, 465C:148-155

379

Purification and characterization of a thermostable aliphatic amidase from the hyperthermophilic archaeon Pyrococcus yayanosii CH1

Fu L, Li XG, Xiao X, Xu J

Extremophiles, 2014, 18(2):429-440

378

Purification, crystallization and preliminary X-ray analysis of the inverse F-BAR domain of the human srGAP2 protein

Wang HP, Zhang Y, Zhang ZY, Jin WL, Wu G

Acta Crystallogr F-Struct Biol Cryst Commun, 2014, 70123-126

377

X-ray structure of a Hg2+ complex of mercuric reductase (Mera):And QM/MM study of Hg2+ transfer between the C-terminal and buried catalytic site cysteine pairs

Lian H, Guo HB,   Riccardi D,   Dong AP, Jerry M Parks,  Xu Q, Emil F Pai,Susan M Miller,Wei DQ, Jeremy C Smith, Guo H

Biochemistry, 2014,25;53(46):7211-7222

376

Crystal structure of dszc from Rhodococcus sp XP at 179 angstrom

Liu SH, Zhang CG, Su TT, Wei TD, Zhu DY, Wang K, Huang Y, Dong YH, Yin K, Xu SJ, Xu P, Gu LC

Proteins, 2014, 82(9):1708-1720

375

Moving interaction boundary electrophoresis and its selective focusing of target guest molecule norfloxacin in urine by a cyclodextrin host

Fan LY, Luo XJ, Li S, Zhang W, Cao CX

Anal Methods, 2014, 6(12):4360-4365

374

Novel pyrrolobenzoxaboroles: Design, synthesis, and biological evaluation against Trypanosome brucei

Wu PH, Zhang J, Meng QQ, Nare B, Jacobs RT, Zhou HC

Eur J Med Chem, 2014, 81:59-75

373

A new glutarimide derivative from marine sponge-derived Streptomyces anulatus S71

Sun DD, Sun W, Yu YX, Li ZY, Deng ZX, Lin SJ

Nat Prod Res, 2014, 28(19):1602-1606

372

Influence of counteranions on catalytic ability of immobilized laccase in cu-alginate matrices: Inhibition of chloride and activation of acetate

Pan T, Sun YJ, Wang XL, Shi T, Zhao YL

Chinese Chem Lett, 2014, 25(7):983-988

371

Theoretical studies of the binding-affinity and reactivity between laccase and phenolic substrates

Qi YB, Zhu JR, Sun YJ, Du Y, Chu JJ, Shi T, Zhao YL, Wang XL

Chem J Chin Univ-Chin, 2014, 35(4):776-783

370

Theoretical studies on the mechanism, enantioselectivity, and axial ligand effect of a ru(salen)-catalyzed asymmetric cyclopropanation reaction

Shi T, Luo Y, Wang XL, Lu SY, Zhao YL, Zhang J

Organometallics, 2014, 33(14):3673-3682

369

Advance in the research on quinomycins biosynthesis

Zhang C, Kong LX, Lei X, Deng ZX, You DL

Chinese J Org Chem, 2014, 34(6):1240-1252

368

Transmembrane permeation mechanism of charged methyl guanidine

Wang YK, Hu D, Wei DQ

J Chem Theory Comput, 2014, 10(4):1717-1726

367

Specific recognition mechanism between RNA and KH3 domain of nova-2 protein

Yu QF, Ye W, Jiang C, Luo R, Chen HF

J Phys Chem B, 2014, 118(43):12426–12434

366

Transferring of red monascus pigments from nonionic surfactant to hydrophobic ionic liquid by novel microemulsion extraction

Shen LJ, Zhang XH, Liu MZ, Wang ZL

Separation and purification technology, 2014, 138:34-40

365

A fullerene colloidal suspension stimulates the growth and denitrification ability of wastewater treatment sludge-derived bacteria

Huang F, Ge L, Zhang B, Wang Y, Tian H, Zhao LP, He YL, Zhang XJ

Chemosphere, 2014, 108411-417

364

Phenotypic and genotypic antimicrobial resistance traits of foodborne Staphylococcus aureus isolates from Shanghai

Xu J, Shi CL, Song MH, Xu XB, Yang PY, Paoli G, Shi XM

J Food Sci, 2014, 79(4):M635-M642

363

Impact of sod on the expression of stress-related genes in Listeria monocytogenes 4b G with/without paraquat treatment

Suo YJ, Liu YH, Zhou XJ, Huang YY, Shi CL, Matthews K, Shi XM

J Food Sci, 2014, 79(9):M1745-M1749

362

Development of a sigde-based real-time reverse-transcriptase PCR for the detection of viable Salmonella enterica

Zhou M, Yang JL, Zhou XJ, Liu B, Liu DX, Yuan CG, He YP, Pan LW, Shi XM

Foodborne Pathog Dis, 2014, 11(7):537-544

361

HrcT is a key component of the type III secretion system in Xanthomonas spp and also regulates the expression of the key hrp transcriptional activator Hrpx

Liu ZY, Zou LF, Xue B, Cai LL, Ma WX, Xiong L, Ji ZY, Chen GY

Appl Environ Microbiol, 2014, 80(13):3908-3919

360

Biosynthesis of the beta-methylarginine residue of peptidyl nucleoside arginomycin in Streptomyces arginensis NRRL 15941

Feng J, Wu J, Gao J, Xia ZG, Deng ZX, He XY

Appl Environ Microbiol, 2014, 80(16):5021-5027

359

Efficient simultaneous saccharification and fermentation of inulin to 2,3-butanediol by thermophilic Bacillus licheniformis ATCC 14580

Li LX, Chen C, Li K, Wang Y, Gao C, Ma CQ, Xu P

Appl Environ Microbiol, 2014, 80(20):6458-6464

358

Operon for biosynthesis of lipstatin, the beta-lactone inhibitor of human

Bai TL, Zhang DZ,  Lin SJ, Long QS,   Wang YM, Ou HY,  Kang QJ, Deng ZX,  Wen L, Tao MF

Appl Environ Microbiol, 2014, 80(24):7473-7483

357

Gut microbiota-based translational biomarkers to prevent metabolic syndrome via nutritional modulation

Xiao SM, Zhao LP

FEMS Microbiol Ecol, 2014, 87(2):303-314

356

A gut microbiota-targeted dietary intervention for amelioration of chronic inflammation underlying metabolic syndrome

Xiao SM, Fei N, Pang XY, Shen J, Wang LH, Zhang BR, Zhang MH, Zhang XJ, …Feng J, Yan FY, Zhao NS, Liu JQ, Long WM, Zhao LP

FEMS Microbiol Ecol, 2014, 87(2):357-367

355

Pyrosequencing reveals diverse microbial community associated with the Zoanthid Palythoa australiae from the South China sea

Sun W, Zhang FL, He LM, Li ZY

Microb Ecol, 2014, 67(4):942-950

354

Comparisons of the fungal and protistan communities among different marine sponge holobionts by pyrosequencing

He LM, Liu F, Karuppiah V, Ren Y, Li ZY

Microb Ecol, 2014, 67(4):951-961

353

Seasonal dynamics and diversity of bacteria in retail oyster tissues

Wang DP, Zhang Q, Cui Y, ShiXM

Int J Food Microbiol, 2014, 173:14-20

352

Identification and characterization of the biosynthetic gene cluster of polyoxypeptin A, a potent apoptosis inducer

Du YH, Wang YM, Huang TT, Tao MF, Deng ZX, Lin SJ

BMC Microbiol, 2014, 14:30

351

Predicting protein-ligand interactions based on chemical preference features with its application to new D-amino acid oxidase inhibitor discovery

Zhao MZ, Chang HT, Zhou Q, Zeng T, Shih CS, Liu ZP, Chen LN, Wei DQ

Curr Pharm Design, 2014, 20(32):5202-5211

350

Catalytic mechanism and origin of high activity of cellulase TmCel12A at high temperature: A quantum mechanical/molecular mechanical study

Lian P, Guo HB, Smith JC, Wei DQ, Guo H

Cellulose, 2014, 21(2):937-949

349

How reliable are molecular dynamics simulations of membrane active antimicrobial peptides?

Wang YK, Zhao TZ, Wei DQ, Strandberg E, Ulrich AS, Ulmschneider JP

Biochim Biophys Acta-Biomembr, 2014, 9:2280-2288

348

A hadoop-based method to predict potential effective drug combination

Sun YF, Xiong Y, Xu Q,  Wei DQ

Biomed Res Int, 2014:196858

347

The gut microbiota and obesity: from correlation to causality

Zhao LP

Nat Rev Microbiol,

2013, 11(9):639-47.

346

Stereospecific biosynthesis of β-methyl tryptophan from L-tryptophan features a stereochemical switch.

Zou y, Fang Q, Yin H, Liang Z, Kong D, Bai L, Deng Z, Lin S

Angew Chem Int Ed ,

2013, 52:12951-955.

345

Characterization of streptonigrin biosynthesis reveals a cryptic carboxyl methylation and an unusual oxidative cleavage of a N-C bond

Xu F, Kong DK, He XY, Zhang Z, Han M, Xie XQ, Wang P, Cheng HR, Tao MF, Zhang LP, Deng ZX, Lin SJ

J Am Chem Soc,

2013, 135(5):1739-48.

344

Structural modulation of gut microbiota in life-long calorie-restricted mice

Zhang CH, Li SF, Yang L, Huang P, Li WJ, Wang SY, Zhao GP, Zhang MH, Pang XY, Yan Z, Liu Y, Zhao LP

Nat Commun,

2013, 4:2163.

343

Structural insight into the mutual recognition and regulation between suppressor of fused and Gli/Ci

Zhang Y, Fu L, Qi XL, Zhang ZY, Xia YX, Jia JH, Jiang J, Zhao Y, Wu G

Nat Commun,

2013, 4:2608.

342

Structural and energetic analysis of drug inhibition of the influenza A M2 proton channel

Gu RX, Liu LA, Wei DQ

Trends Pharmacol Sci,

2013, 34(10):571-80.

341

An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice

Fei N, Zhao LP

Isme J,

2013, 7(4):880-84.

340

Systematic unraveling of the unsolved pathway of nicotine degradation in Pseudomonas.

Tang HZ., Wang LJ., Wang WW., Yu H., Zhang KZ., Yao YX., and Xu P.*

PloS Genet,

2013. 9(10):e1003923.

339

RecJ-like protein from Pyrococcus furiosus has 3'-5' exonuclease activity on RNA: implications for proofreading of 3'-mismatched RNA primers in DNA replication

Yuan H, Liu XP, Han Z, Allers T, Hou JL, Liu JH

Nucleic Acids Res,

2013, 41(11):5817-26.

338

SecReT4: a web-based bacterial type IV secretion system resource

Bi DX, Liu LM, Tai C, Deng ZX, Rajakumar K, Ou HY

Nucleic Acids Res,

2013, 41(D1):D660-D65.

337

Metabolic and pathway engineering to influence native and altered erythromycin production through E. coli

Jiang M, Pfeifer BA

Metab Eng,

2013, 19:42-49.

336

Deciphering and engineering of the final step halogenase for improved chlortetracycline biosynthesis in industrial Streptomyces aureofaciens

Zhu T, Cheng XQ, Liu YT, Deng ZX, You DL

Metab Eng,

2013, 19:69-78.

335

Tandem modifications of an epoxyquinone C7N pharmacophore

Bai LQ

Chem Biol,

2013, 20(7):859-60.

334

Simple boric acid-based fluorescent focusing for sensing of glucose and glycoprotein via multipath moving supramolecular boundary electrophoresis chip

Dong JY, Li S, Wang HY, Meng QH, Fan LY, Xie HY, Cao CX, Zhang WB

Anal Chem,

2013, 85(12):5884-91.

333

Phylogenetically diverse endozoic fungi in the South China Sea sponges and their potential in synthesizing bioactive natural products suggested by PKS gene and cytotoxic activity analysis

Yu ZS, Zhang BH, Sun W, Zhang FL, Li ZY

Fungal Divers,

2013, 58(1):127-41.

332

The diffusible factor synthase XanB2 is a bifunctional chorismatase that links the shikimate pathway to ubiquinone and xanthomonadins biosynthetic pathways

Zhou L, Wang JY, Wang JH, Poplawsky A, Lin SJ, Zhu BS, Chang CQ, Zhou TL, Zhang LH, He YW

Mol Microbiol,

2013, 87(1):80-93.

331

Structural and computational studies of the maleate isomerase from Pseudomonas putida S16 reveal a breathing motion wrapping the substrate inside

Chen DD, Tang HZ, Lv Y, Zhang ZY, Shen KL, Lin K, Zhao YL, Wu G, Xu P

Mol Microbiol,

2013, 87(6):1237-44.

330

Efficient ethanol production from corncob residues by repeated fermentation of an adapted yeast

Fan C, Qi K, Xia XX, Zhong JJ

Bioresour Technol,

2013, 136:309-15.

329

Production of acetol from glycerol using engineered Escherichia coli

Zhu HL, Yi XY, Liu Y, Wood TK, Hu HB, Zhang XH

Bioresour Technol,

2013, 149:238-43.

328

Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas

Shen XM, Hu HB, Peng HS, Wang W, Zhang XH

BMC Genomics,

2013, 14:271.

327

A visual detection of protein content based on titration of moving reaction boundary electrophoresis

Wang HY, Guo CY, Guo CG, Fan LY, Zhang L, Cao CX

Anal Chim Acta,

2013, 774:92-99.

326

A rapid method for the detection of foodborne pathogens by extraction of a trace amount of DNA from raw milk based on amino-modified silica-coated magnetic nanoparticles and polymerase chain reaction

Bai YL, Song MH, Cui Y, Shi CL, Wang DP, Paoli GC, Shi XM

Anal Chim Acta,

2013, 787:93-101.

325

The rice bacterial pathogen Xanthomonas oryzae pv. oryzae produces 3-hydroxybenzoic acid and 4-hydroxybenzoic acid via XanB2 for use in xanthomonadin, ubiquinone, and exopolysaccharide biosynthesis

Zhou L, Huang TW, Wang JY, Sun S, Chen GY, Poplawsky A, He YW

Mol Plant-Microbe Interact,

2013, 26(10):1239-48.

324

Impact of resistance mutations on inhibitor binding to HIV-1 integrase

Chen Q, Buolamwini JK, Smith JC, Li A, Xu Q, Cheng X, Wei DQ

J Chem Inf Model,

2013, 53(12):3297-307.

323

Chlamydophila pneumoniae endonuclease IV prefers to remove mismatched 3 ' ribonucleotides: Implication in proofreading mismatched 3 '-terminal nucleotides in short-patch repair synthesis

Xie JJ, Liu XP, Han Z, Yuan H, Wang Y, Hou JL, Liu JH

DNA Repair,

2013, 12(2):140-47.

322

Harnessing the potential of halogenated natural product biosynthesis by mangrove-derived actinomycetes

Li X-G, Tang X-M, Xiao J, Ma G-H, Xu L, Xie S-J, Xu M-J, Xiao X, Xu J

Marine drugs,

2013, 11(10):3875-90.

321

Identification of two novel anti-fibrotic benzopyran compounds produced by engineered strains derived from Streptomyces xiamenensis M1-94P that originated from deep-sea sediments

You Z-Y, Wang Y-H, Zhang Z-G, Xu M-J, Xie S-J, Han T-S, Feng L, Li X-G, Xu J

Marine drugs,

2013, 11(10):4035-49.

320

Model creation of moving redox reaction boundary in agarose gel electrophoresis by traditional potassium permanganate method

Xie HY, Liu Q, Li JH, Fan LY, Cao CX

Analyst,

2013, 138(4):1137-40.

319

Determination of free acidic and alkaline residues of protein via moving reaction boundary titration in microdevice electrophoresis

Wang HY, Li S, Tang YY, Dong JY, Fan LY, Cao CX

Analyst,

2013, 138(12):3544-51.

318

Theoretical and experimental studies on isotachophoresis in multi-moving chelation boundary system formed with metal ions and EDTA

Zhang W, Guo CG, Fan LY, Cao CX

Analyst,

2013, 138(17):5039-51.

317

Mathematical model and dynamic computer simulation on free flow zone electrophoresis

Zhang J, Yan J, Li S, Pang B, Guo CG, Cao CX, Jin XQ

Analyst,

2013, 138(19):5734-44.

316

Kink turn sRNA folding upon L7Ae binding using molecular dynamics simulations

Ye W, Yang JX, Yu QF, Wang W, Hancy J, Luo R, Chen HF

Phys Chem Chem Phys,

2013, 15(42):18510-22.

315

A trans-acting ketoreductase in biosynthesis of a symmetric polyketide dimer SIA7248

Zou Y, Yin HX, Kong DK, Deng ZX, Lin SJ

ChemBioChem,

2013, 14(6):679-83.

314

In vitro characterization of echinomycin biosynthesis: formation and hydroxylation of L-tryptophanyl-S-enzyme and oxidation of (2S,3S) beta- hydroxytryptophan

Zhang C, Kong LX, Liu Q, Lei X, Zhu T, Yin J, Lin BR, Deng ZX, You DL

PLoS One,

2013, 8(2):e56772.

313

Global conformational selection and local induced fit for the recognition between intrinsic disordered p53 and CBP

Yu QF, Ye W, Wang W, Chen HF

PLoS One,

2013, 8(3):e59627.

312

Phylogenetically diverse ureC genes and their expression suggest the urea utilization by bacterial symbionts in marine sponge Xestospongia testudinaria

Su J, Jin LL, Jiang Q, Sun W, Zhang FL, Li ZY

PLoS One,

2013, 8(5):e64848.

311

The different potential of sponge bacterial symbionts in N-2 release indicated by the phylogenetic diversity and abundance analyses of denitrification genes, nirK and nosZ

Zhang X, He LM, Zhang FL, Sun W, Li ZY

PLoS One,

2013, 8(6):e65142.

310

Characterization of two Streptomyces enzymes that convert ferulic acid to vanillin

Yang WW, Tang HZ, Ni J, Wu QL, Hua DL, Tao F, Xu P

PLoS One,

2013, 8(6):e67339.

309

Discovery and characterization of BlsE, a radical S-adenosylL-methionine decarboxylase involved in the blasticidin S biosynthetic pathway

Feng J, Wu J, Dai N, Lin SJ, Xu HH, Deng ZX, He XY

PLoS One,

2013, 8(7):e68545.

308

The regulatory role of ferric uptake regulator (Fur) during anaerobic respiration of Shewanella piezotolerans WP3

Yang XW, He Y, Xu J, Xiao X, Wang FP

PLoS One,

2013, 8(10):e75588.

307

Identification of Mur34 as the novel negative regulator responsible for the biosynthesis of muraymycin in Streptomyces sp NRRL30471

Xu DM, Liu G, Cheng L, Lu XH, Chen WQ, Deng ZX

PLoS One,

2013, 8(10):e76068.

306

Structural comparison of the wild-type and drug-resistant mutants of the influenza A M2 proton channel by molecular dynamics simulations

Gu RX, Liu LA, Wang YH, Xu Q, Wei DQ

J Phys Chem B,

2013, 117(20):6042-51.

305

Transcriptome analysis of candidate genes and signaling pathways associated with light-induced brown film formation in Lentinula edodes

Tang LH, Jian HH, Song CY, Bao DP, Shang XD, Wu DQ, Tan Q, Zhang XH

Appl Microbiol Biotechnol,

2013, 97(11):4977-89.

304

Streptomyces lividans blasticidin S deaminase and its application in engineering a blasticidin S-producing strain for ease of genetic manipulation

Li L, Wu J, Deng ZX, Zabriskie TM, He XY

Appl Environ Microbiol,

2013, 79(7):2349-57.

303

Role of filamentous phage SW1 in regulating the lateral flagella of Shewanella piezotolerans strain WP3 at low temperatures

Jian HH, Xiao X, Wang FP

Appl Environ Microbiol,

2013, 79(22):7101-09.

302

Novel moving reaction boundary-induced stacking and separation of human hemoglobins in slab polyacrylamide gel electrophoresis

Tang YY, Wang HY, Chen L, Li S, Guo CG, Fan HZ, Cao CX, Fan LY

Anal Bioanal Chem,

2013, 405(26):8587-95.

301

Induced effect of  Na plus on ganoderic acid biosynthesis in static liquid culture of Ganoderma lucidum via calcineurin signal transduction

Xu YN, Xia XX, Zhong JJ

Biotechnol Bioeng,

2013, 110(7):1913-23.

299

Exogenous 1, 4butyrolactone stimulates Afactorlike cascade and validamycin biosynthesis in Streptomyces hygroscopicus 5008

Tan GY, Bai L, Zhong JJ

Biotechnol Bioeng,

2013, 110(11):2984-93.

298

Conformational selection and induced fit in specific antibody and antigen recognition: SPE7 as a case study

Wang W, Ye W, Yu QF, Jiang C, Zhang J, Luo R, Chen HF

J Phys Chem B,

2013, 117(17):4912-23.

297

Car-Parrinello molecular dynamics/molecular mechanics (CPMD/MM) simulation study of coupling and uncoupling mechanisms of cytochrome P450cam

Lian P, Li J, Wang DQ, Wei DQ

J Phys Chem B,

2013, 117(26):7849-56.

296

Mathematical model and computer simulation on moving precipitate boundary electrophoresis for offline sample pre- concentration of heavy metal ion

Chang J, Zhang J, Wang HY, Fan LY, Fan YP, Li S, Cao CX

Talanta,

2013, 103:314-21.

295

Stump-like mathematical model and computer simulation on dynamic separation of capillary zone electrophoresis with different sample injections

Zhang J, Huang QF, Jin J, Chang J, Li S, Fan LY, Cao CX

Talanta,

2013, 105:278-86.

294

Study on stability mechanism of immobilized pH gradient in isoelectric focusing via Svensson-Tiselius differential equation and moving reaction boundary

Guo C-G, Li S, Wang H-Y, Zhang D, Li G-Q, Zhang J, Fan L-Y, Cao C-X

Talanta,

2013, 111:20-7.

293

Impact of glutathione-HbA1c on HbA1c measurement in diabetes diagnosis via array isoelectric focusing, liquid chromatography, mass spectrometry and ELISA.

Qi J, Shao CL, Li ZY, Gan LS, Fu XM, Bian WT, Zhao HY, Wang CY.

Talanta,

2013,76(4):571-79.

292

A stable and high-resolution isoelectric focusing capillary array device for micropreparative separation of proteins.

Li S, Dong JY, Guo CG, Wu YX, Zhang W, Fan LY, Cao CX, Zhang WB.

Talanta,

2013, 116:259-265

291

Catalytic mechanism and origin of high activity of cellulase TmCel12A at high temperature: a quantum mechanical/molecular mechanical study

Lian P, Guo H-B, Smith JC, Wei D-Q, Guo H

Cellulose,

2013, 1-13.

290

Site selectivity for protein tyrosine nitration: insights from features of structure and topological network

Cheng SL, Lian BF, Liang J, Shi T, Xie L, Zhao YL

Mol Biosyst,

2013, 9(11):2860-68.

289

In vivo investigation of the substrate recognition capability and activity affecting amino acid residues of glycosyltransferase FscMI in the biosynthesis of candicidin

Lei X, Kong LX, Zhang C, Liu Q, Yao F, Zhang WK, Deng ZX, You DL

Mol Biosyst,

2013, 9(3):422-30.

288

Structural changes of gut microbiota in a rat non-alcoholic fatty liver disease model treated with a Chinese herbal formula

Yin XC, Peng JH, Zhao LP, Yu YP, Zhang X, Liu P, Feng Q, Hu YY, Pang XY

Syst Appl Microbiol,

2013, 36(3):188-96.

287

Phylogenetic diversity of Actinobacteria associated with soft coral Alcyonium gracllimum and stony coral Tubastraea coccinea in the east China sea

Yang S, Sun W, Tang C, Jin LL, Zhang FL, Li ZY

Microb Ecol,

2013, 66(1):189-99.

286

The ammonia oxidizing and denitrifying prokaryotes associated with sponges from different sea areas

Han MQ, Li ZY, Zhang FL

Microb Ecol,

2013, 66(2):427-36.

285

Fast and selective determination of total protein in milk powder via titration of moving reaction boundary electrophoresis

Guo CY, Wang HY, Liu XP, Fan LY, Zhang L, Cao CX

Electrophoresis,

2013, 34(9-10):1343-51.

284

A simple chip free-flow electrophoresis for monosaccharide sensing via supermolecule interaction of boronic acid functionalized quencher and fluorescent dye

Yin XY, Dong JY, Wang HY, Li S, Fan LY, Cao CX

Electrophoresis,

2013, 34(15):2185-92.

283

Global control of GacA in secondary metabolism, primary metabolism, secretion systems, and motility in the rhizobacterium Pseudomonas aeruginosa M18

Wei X, Huang XQ, Tang LL, Wu DQ, Xu YQ

J Bacteriol,

2013, 195(15):3387-400.

282

Characterization of the N-methyltransferase CalM involved in calcimycin biosynthesis by Streptomyces chartreusis NRRL 3882

Wu QL, Gou LX, Lin SJ, Liang JD, Yin J, Zhou XF, Bai LQ, An DR, Deng ZX, Wang ZJ

Biochimie,

2013, 95(7):1487-93.

281

The role of aromatic L-amino acid decarboxylase in bacillamide C biosynthesis by Bacillus atrophaeus C89

Lei YW, Zhang FL, Chen QH, Lin SJ, Zhao YL, Li ZY

Sci Rep,

2013, 3:1753.

280

Engineering of cofactor regeneration enhances (2S,3S)-2,3-butanediol production from diacetyl

Wang Y, Li LX, Ma CQ, Gao C, Tao F, Xu P

Sci Rep,

2013, 3:2643.

279

Iron(II)-dependent dioxygenase and N-formylamide deformylase catalyze the reactions from 5-hydroxy-2-pyridone to maleamate

Yao YX, Tang HZ, Ren HX, Yu H, Wang LJ, Zhang W, Behrman EJ, Xu P

Sci Rep,

2013, 3:3235.

278

A novel thermophilic beta-glucosidase from caldicellulosiruptor bescii: characterization and its synergistic catalysis with other cellulases

Bai AX, Zhao XY, Jin YW, Yang GY, Feng Y

J Mol Catal B-Enzym,

2013, 85-86:248-56.

277

Phylogenetically diverse denitrifying and ammonia-oxidizing bacteria in corals Alcyonium gracillimum and Tubastraea coccinea

Yang S, Sun W, Zhang FL, Li ZY

Mar Biotechnol,

2013, 15(5):540-51.

276

Elicitation of ginsenoside biosynthesis in cell cultures of Panax ginseng by vanadate

Huang C, Zhong JJ

Process Biochem,

2013, 48(8):1227-34.

275

Enhanced production of (+)-terrein by Aspergillus terreus strain PF26 with epigenetic modifier suberoylanilide hydroxamic acid

Xiao L, Yin Y, Sun W, Zhang FL, Li ZY

Process Biochem,

2013, 48(11):1635-39.

274

Virtual screening for alpha7 nicotinic acetylcholine receptor for treatment of Alzheimer's disease

Chen SG, Gu RX, Dai H, Wei DQ

J Mol Graph,

2013, 39:98-107.

273

Biosynthesis and pathway engineering of antifungal polyene macrolides in actinomycetes

Kong DK, Lee MJ, Lin SJ, Kim ES

J Ind Microbiol Biotechnol,

2013, 40(6):529-43.

272

OxyR, an important oxidative stress regulator to phenazines production and hydrogen peroxide resistance in Pseudomonas chlororaphis GP72

Xie K, Peng HS, Hu HB, Wang W, Zhang XH

Microbiol Res,

2013, 168(10):646-53.

271

Quantitative investigation on the stacking of metal ions induced by another metal ion based on moving substitution boundary electrophoresis

Lou J, Liu Q, Wang HY, Fan LY, Zhang SS, Liang H, Cao CX

Anal Methods

2013, 5(22):6345-51.

270

Improved heterologous erythromycin A production through expression plasmid re-design

Jiang M, Fang L, Pfeifer BA

Biotechnol Prog

2013, 29(4):862-69.

277

Molecular dynamics simulations of amyloid fibrils: an in silico approach

Ye W, Wang W, Jiang C, Yu QF, Chen HF

Acta Biochim Biophys Sin,

2013, 45(6):503-08.

276

Exploring the ligand-protein networks in traditional Chinese medicine: current databases, methods, and applications

Zhao MZ, Zhou Q, Ma WH, Wei DQ

Evid-based Complement Altern Med,

2013,806072.

275

Expression, purification and biochemical characterization of Methanocaldococcus jannaschii DNA ligase

Wang Y, Xie JJ, Han Z, Liu JH, Liu XP

Protein Expr Purif,

2013, 87(2):79-86.

274

Insight into the binding mode between HIV-1 integrase and pyrimidone analogue inhibitors with MD simulation and 3D-QSAR

Ma SY, Ye W, Ji DJ, Chen HF

Med Chem,

2013, 9(3):420-33.

273

Discovering the roles of subsurface microorganisms: Progress and future of deep biosphere investigation

Wang FP, Lu SL, Orcutt BN, Xie W, Chen Y, Xiao X, Edwards KJ

Chin Sci Bull,

2013, 58(4-5):456-67.

272

Evidence from O-18 feeding studies for hydroxyl group donor in the reaction catalyzed by cytidylate hydroxymethylase MilA

Chen C, Gao TL, Zhao G, Deng ZX, Hu SC, Xu HH, He XY

Chin Sci Bull,

2013, 58(8):864-68.

271

Enhanced production of (+)-terrein in fed-batch cultivation of Aspergillus terreus strain PF26 with sodium citrate

Yin Y, Xu BL, Li ZY, Zhang BH

World J Microbiol Biotechnol,

2013, 29(3):441-46.

270

Applications of rare event dynamics on the free energy calculations for membrane protein systems

Wang YK, Wei DQ, Gu RX, Fan HM, Ulmschneider J

Can J Chem-Rev Can Chim,

2013, 91(9):769-74.

269

The resolution of aglinin A epimers and their NMR assignments

Feng TX, Qu SJ, Tan JJ, Jiang K, Tan CH, Lin SJ

J Asian Nat Prod Res,

2013, 15(1):89-93.

268

High-performance liquid chromatography analysis of Lomofungin in Streptomyces lomondensis

Li S, Ye QM, Wang W, Hu HB, Zhang XH

J Liq Chromatogr Relat Technol,

2013, 36(15):2059-68.

267

Genome sequences of two morphologically distinct and thermophilic Bacillus coagulans strains, H-1 and XZL9

Xu K, Su F, Tao F, Li C, Ni J, Xu P

Genome announcements,

2013, 1(3).

266

Genome sequence of Clostridium diolis strain DSM15410, a promising natural producer of 1, 3-propanediol

Wang Y, Tao F, Tang H, Xu P

Genome announcements,

2013, 1(4):e00542-13.

265

Genome sequence of Klebsiella pneumoniae strain ATCC 25955, an oxygen-insensitive producer of 1, 3-propanediol

Wang Y, Tao F, Li C, Li L, Xu P

Genome announcements,

2013, 1(4):e00587-13.

264

Metagenome reveals potential microbial degradation of hydrocarbon coupled with sulfate reduction in an oil-immersed chimney from Guaymas Basin

He Y, Xiao X, Wang F

Frontiers in microbiology,

2013, 4:148.

263

Direct biodiesel production from wet microalgae biomass of Chlorella pyrenoidosa through in situ transesterification

Cao HC, Zhang ZL, Wu XW, Miao XL

Biomed Res Int,

2013, 930686.

262

Asm8, a specific LAL-type activator of 3-amino-5-hydroxybenzoate biosynthesis in ansamitocin production

Pan WQ, Kang QJ, Wang L, Bai LQ, Deng ZX

Sci China-Life, Sci

2013, 56(7):601-08.

261

Biosynthesis of 3,5-AHBA-derived natural products

Kang Q, Shen Y, Bai L

Nat Prod Rep,

2012, 29(2):243-263

260

Toward steadfast growth of antibiotic research in China: From natural products to engineered biosynthesis

Kang Q, Bai L, Deng Z

Biotechnol Adv,

2012, 30(6):1228-1241

259

Production of biomass and useful compounds from adventitious roots of high-value added medicinal plants using bioreactor.

Baque MA, Moh SH, Lee EJ, Zhong JJ, Paek KY

Biotechnol Adv,

2012, 30(6):1255-67

258

Impacts of calcium signal transduction on the fermentation production of antitumor ganoderic acids by medicinal mushroom Ganoderma lucidum.

Xu YN, Zhong JJ

Biotechnol Adv,

2012, 30(6):1301-8

257

Structural basis for the recognition of Asef by adenomatous polyposis coli.

Zhang Z, Chen L, Gao L, Lin K*, Zhu L, Lu Y, Shi X, Gao Y, Zhou J, Xu P, Zhang J, Wu G

Cell Res,

2012, 22(2):372-86

256

Structural insights into DndE from Escherichia coli B7A involved in DNA phosphorothioation modification.

Hu W, Wang C, Liang J, Zhang T, Hu Z, Wang Z, Lan W, Li F, Wu H, Ding J, Wu G, Deng Z, Cao C

Cell Res,

2012, 22(7):1203-6

255

ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria.

Bi D, Xu Z, Harrison EM, Tai C, Wei Y, He X, Jia S, Deng Z, Rajakumar K, Ou HY

Nucleic Acids Res,

2012, 40 (D1):D621-6

254

Phosphorothioate DNA as an antioxidant in bacteria.

Xie X, Liang J, Pu T, Xu F, Yao F, Yang Y, Zhao YL, You D, Zhou X, Deng Z, Wang Z

Nucleic Acids Res,

2012, 40(18):9115-24

253

Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers.

Wang T, Cai G, Qiu Y, Fei N, Zhang M, Pang X, Jia W, Cai S, Zhao L

ISME J,

2012, 6(2):320-9

252

Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations.

Zhang C, Zhang M, Pang X, Zhao Y, Wang L, Zhao L

ISME J,

2012, 6(10):1848-57

251

Elucidation of piericidin A1 biosynthetic locus revealed a thioesterase-dependent mechanism of α-pyridone ring formation.

Liu Q, Yao F, Chooi Y, Kang Q, Xu W, Li Y, Shao Y, Shi Y, Deng Z, Tang Y, You D

Chem Biol,

2012, 19(2):243-53

250

Unveiling the post-PKS redox tailoring steps in biosynthesis of the type II polyketide antitumor antibiotic xantholipin.

Zhang W, Wang L, Kong L, Wang T, Chu Y, Deng Z, You D

Chem Biol,

2012, 19(3):422-32

249

Engineering of an industrial polyoxin producer for the rational production of hybrid peptidyl nucleoside antibiotics.

Zhai L, Lin S, Qu D, Hong X, Bai L, Chen W, Deng Z

Metab Eng,

2012, 14(4):388-93

248

Prediction and functional analysis of single nucleotide polymorphisms.

Li L, Chen Q, Wei DQ

Curr Drug Metab,

2012, 13(7):1012-23

247

RNase HIII from Chlamydophila pneumoniae can efficiently cleave double-stranded DNA carrying a chimeric ribonucleotide in the presence of manganese.

Lu Z, Liang R, Liu X, Hou J, Liu J

Mol Microbiol,

2012, 83(5):1080-93

246

Appendant structure plays an important role in amyloidogenic cystatin dimerization prior to domain swapping

Yu Y, Liu X, He J, Zhang M, Li H, Wei D, Song Y

J Biomol Struct Dyn,

2012, 287(35):29568-78

245

Performance and bacterial compositions of aged refuse reactors treating mature landfill leachate.

Xie B, Xiong S, Liang S, Hu C, Zhang X, Lu J

Bioresour Technol,

2012, 103(1):71-7

244

Efficient conversion of 1,2-butanediol to (R)-2-hydroxybutyric acid using whole cells of Gluconobacter oxydans

Gao C, Zhang W, Huang Y, Ma C, Xu P

Bioresour Technol,

2012, 115:75-8

243

Biocatalytic production of (2S,3S)-2,3-butanediol from diacetyl using whole cells of engineered Escherichia coli

Li L, Wang Y, Zhang L, Ma C, Wang A, Tao F, Xu P

Bioresour Technol,

2012, 115:111-116

242

Alumina nanoparticles-induced effects on wastewater nitrogen and phosphorus removal after short-term and long-term exposure.

Chen Y, Su Y, Zheng X, Chen H, Yang H

Water Res,

2012, 46(14):4379-86

241

Crystal structure of hyperthermophilic endo-β-1, 4-glucanase: implications for catalytic mechanism and thermostability.

Zheng B, Yang W, Zhao X, Wang Y, Lou Z, Rao Z, Feng Y

J Biol Chem,

2012, 287(11):8336-46

240

Chimeric cellulase matrix for investigating intramolecular synergism between non-hydrolytic disruptive functions of carbohydrate-binding modules and catalytic hydrolysis.

Wang Y, Tang R, Tao J, Wang X, Zheng B, Feng Y

J Biol Chem,

2012, 287(35):29568-78

239

Autoinhibitory mechanism for the mutation-induced impaired FGF9 signaling.

Wang Y, Wu XL, Wei DQ, Li YX, Wang JF

J Chem Info Modeling,

2012, 30(1):102-12

238

Deletion of TnAbaR23 results in both expected and unexpected antibiogram changes in a multi-drug resistant Acinetobacter baumannii strain

Kochar M, Crosatti M, Harrison EM, Rieck B, Chan J, Constantinidou C, Pallen M, Ou HY, Rajakumar K

Antimicrob Agents Ch,

2012, 56(4):1845-1853

237

Recent progress on bioinformatics, functional genomics, and metabolomics research of cytochrome P450 and its impact on drug discovery.

Zhang T, Zhao M, Pang Y, Zhang W, Angela Liu L, Wei DQ

Curr Top Med Chem,

2012, 12(12):1346-55

236

Structural and functional analysis of validoxylamine A 7’-phosphate synthase ValL involved in validamycin A biosynthesis.

Zheng L, Zhou X, Zhang H, Ji X, Li L, Huang L, Bai L, Zhang H

PLoS One,

2012, 7(2):e32033

235

Insight into the stability of cross-beta amyloid fibril from VEALYL short peptide with molecular dynamics simulation

Ye W, Chen Y, Wang W, Yu Q, Li Y, Zhang J, Chen HF

PLoS One,

2012, 7(5):e36382

234

NAD-independent l-lactate dehydrogenase is required for l-lactate utilization in Pseudomonas stutzeri SDM

Gao C, Jiang T, Dou P, Ma C, Li L, Kong J, Xu P

PLoS One,

2012, 7(5):e36519

233

Crystal structure of the cysteine desulfurase DndA from Streptomyces lividans which is involved in DNA phosphorothioation.

Chen F, Zhang Z, Lin K*, Qian T, Zhang Y, You D, He X, Wang Z, Liang J, Deng Z, Wu G

PLoS One,

2012, 7(5):e36635

232

Carotenoids play a positive role in the degradation of heterocycles by Sphingobium yanoikuyae

Liu X, Gai Z, Tao F, Tang H, Xu P

PLoS One,

2012, 7(6):e39522

231

Transcriptional activation of pyoluteorin operon mediated by the LysR-type regulator PltR bound at a 22 bp lys box in Pseudomonas aeruginosa M18.

Li S, Huang X, Wang G, Xu Y

PLoS One,

2012, 7(6):e39538

183

Volatile organic compounds from a Tuber melanosporum fermentation system.

Li YY, Wang G, Li HM, Zhong JJTang YJ

Food Chem,

2012, 135(4):2628-37

182

Involvement of Ser94 in RNase HIII from Chlamydophila pneumoniae in the recognition of a single ribonucleotide misincorporated into double-stranded DNA.

Lu Z, Hou J, Wang Y, Liu J

Biochim Biophys Acta.,

20121824(7):859-865

181

Rationally re-designed mutation of NAD-independent l-lactate dehydrogenase: high optical resolution of racemic mandelic acid by the engineered Escherichia coli

Jiang T, Gao C, Dou P, Ma C, Kong J, Xu P

Microb Cell Fact,

2012, 23;11:151

180

A thermostable recombinant transaldolase with high activity over a broad pH range.

Huang SY, Zhang YH, Zhong JJ

Appl Microbiol Biotechnol,

2012, 93(6):2403-102012, 93(6):2403-10

179

Perstraction of intracellular pigments by submerged cultivation of Monascus in nonionic surfactant micelle aqueous solution.

Hu Z, Zhang X, Wu Z, Qi H, Wang Z

Appl Microbiol Biotechnol,

2012, 94(1):81-9

178

Structural analysis and biosynthetic engineering of a solubility-improved and less-hemolytic nystatin-like polyene in Pseudonocardia autotrophica.

Lee MJ, Kong D, Han K, Sherman DH, Bai L, Deng Z, Lin S, Kim ES

Appl Microbiol Biotechnol,

2012, 95(1):157-68

177

Comparative analysis of temperature-dependent transcriptome of Pseudomonas aeruginosa strains from rhizosphere and human habitats.

Wu DQ, Li Y, Xu Y.

Appl Microbiol Biotechnol,

2012, 96(4):1007-19. 

176

Bacterial and archaeal symbionts in the South China Sea sponge Phakellia fusca: community structure, relative abundance, and ammonia-oxidizing populations.

Han M, Liu F, Zhang F, Li Z, Lin H

Mar Biotechnol,

2012, 14(6):701-13

175

Enhancing separation of histidine from amino acids via free-flow affinity electrophoresis with gravity-induced uniform hydrodynamic flow.

Pang B, Shao J, Zhang J, Geng JZ, Fan LY, Cao CX, Hou JL

Electrophoresis,

2012, 33(5):856-865

174

Quantitative investigation of resolution increase of free-flow electrophoresis via simple interval sample injection and separation

Shao J, Fan LY, Cao CX, Huang XQ, Xu YQ

Electrophoresis,

2012, 33(14):2065-74

173

Simply enhancing throughput of free-flow electrophoresis via organic-aqueous environment for purification of weak polarity solute of phenazine-1-carboxylic acid in fermentation of Pseudomonas sp. M18

Yang JH, Shao J, Wang HY, Dong JY, Fan LY, Cao CX, Xu YQ

Electrophoresis,

2012, 33(18):925-2930

172

Characterization of a novel chaperone/usher fimbrial operon present on KpGI-5, a methionine tRNA gene-associated genomic island in Klebsiella pneumoniae

van Aartsen JJ, Stahlhut SG, Harrison EM, Crosatti M, Ou HY, Krogfelt KA, Struve C, Rajakumar K

BMC Microbiol,

2012, 12:59

171

Ammonia-containing dimethyl sulfoxide (DMSO): An improved solvent for the dissolution of formazan crystals in the MTT assay.

Wang H, Wang F, Tao X, Cheng H

Anal Biochem,

2012, 421(1):324-6

170

A simple monolithic column electroelution for protein recovery from gel electrophoresis.

Li GQ, Shao J, Guo CG, Dong JY, Fan LY, Cao CX

Anal Biochem,

2012, 430(1):24-31

169

Adaptive visual and auditory map alignment in barn owl superior colliculus and its neuromorphic implementation

Huo J, Murray A, Wei DQ

IEEE T NEURAL NETWOR,

2012, 23(9):1486-97

168

Isolation and analysis of differentially expressed genes during asexual sporulation in liquid static culture of Ganoderma lucidum by suppression subtractive hybridization.

Xu JW, Zhao W, Xu YN, Zhong JJ

Mol Biol Rep,

2012, 39(4):3603-10

167

Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation.

Zhang X, Nesme J, Simonet P, Frostegård A

Res Microbiol,

2012, 163(3):200-10

166

Extractive fermentation for enhanced production of thailandepsin A from Burkholderia thailandensis E264 using polyaromatic adsorbent resin Diaion HP-20.

Liu B, Hui J, Cheng YQ, Zhang X

J Ind Microbiol Biotechnol,

2012, 57(3):813-819

165

Cytotoxic and pro-apoptotic effects of novel ganoderic acid derivatives on human cervical cancer cells in vitro.

Liu RM, Li YB, Zhong JJ

Eur J Pharmacol,

2012, 681(1-3):23-33

164

Enhancement of cordycepin production in submerged cultures of Cordyceps militaris by addition of ferrous sulfate.

Fan DD, Wang W, Zhong JJ

Biochem Eng J,

2012, 60:30-35

163

First total synthesis and determination of the absolute configuration of 1-N-methyl-3-methylamino-[N-butanoicacid-3-(9-methyl-8-propen-7-one)-amide]-benzo[f][1,7]naphthyridine-2-one, a novel benzonaphthyridine alkaloid

Tian CS, Jiao XZ, Liu XY, Li RZ, Dong L, Liu XJ, Zhang ZG, Xu J, Xu MJ, Xie P

Tetrahedron Lett,

2012, 53(36):4892-95

162

Medium optimization for the high yield production of single (+)-terrein by Aspergillus terreus strain PF26 derived from marine sponge Phakellia fusca.

Yin Y, Gao Q, Zhang F, Li Z

Process Biochem,

2012, 47(5):887-891

161

Purification and characterization of a flavin reductase from the biodesulfurizing bacterium Mycobacterium goodii X7B.

Li Q, Feng J, Gao C, Li F, Yu C, Meng L, Zhang Z, Ma C, Gu L, Wu G, Xu P

Process Biochem,

2012, 47(7):1144-49

160

A newly isolated strain of Stenotrophomonas sp. hydrolyzes acetamiprid, a synthetic insecticide

Tang H, Li J, Hu H, Xu P

Process Biochem,

2012, 47(12):1820-25

159

Redesigning the active site of a carboxyl esterase from the archaeon Archaeoglobus fulgidus to improve sensitivity to organophosphorus compounds.

Wang Y, Li B, Han W, Yang G, Zhang Z, Feng Y

Process Biochem,

2012, 47(12):2219-26

158

Classification models for predicting cytochrome P450 enzyme-substrate selectivity

Zhang T, Dai H, Limin Angela Liu, David F V Lewis, Wei DQ

Mol Inform,

2012, 31(1):53-6

157

Enhancing macrolide production in Streptomyces by coexpressing three heterologous genes.

Wang T, Bai L, Zhu D, Lei X, Liu G, Deng Z, You D

Enzyme Microb Technol,

2012, 50(1):5-9

156

Revealing interaction mode between HIV-1 protease and mannitol analog inhibitor

Yan GW, Chen Y, Li Y, Chen HF

Chem Biol Drug Des,

2012, 79(6):916-925

155

Polysaccharides from the medicinal mushroom Cordyceps taii show antioxidant and immunoenhancing activities in a D-galactose-induced aging mouse model.

Xiao JH, Xiao DM, Chen DX, Xiao Y, Liang ZQ, Zhong JJ

Evid Based Complement Alternat Med,

2012, 2012:273435

154

First-principles study of the structural and elastic properties of Cr2AlX (X=N, C) compounds

Cui SX, Wei DQ, Hu HQ, Feng WX, Gong ZZ

J Solid State Chem,

2012, 191:147-152

153

Tailoring enzymes acting on carrier protein-tethered substrates in natural product biosynthesis.

Lin S, Huang T, Shen B*

Methods Enzymol,

2012, 516:321-43

152

SCYPPred: a web-based predictor of SNPs for human cytochrome P450.

Li L, Wei DQ, Wang JF, Chou KC

Protein Pept Lett,

2012, 19(1):57-61

151

Enzyme promiscuity in the hormone-sensitive lipase family of proteins

Giuseppe M, Luigia M, Elena P, Yan F, Luigi M

Protein Pept Lett,

2012, 19(2):144-154

150

A novel miniature culture system to screen CO2-sequestering microalgae

Wei H, Li C, Miao X, Yu G

Energies,

2012, 5(11):4372-89

149

A non-restricting and non-methylating Escherichia coli strain for DNA cloning and high-throughput conjugation to Streptomyces coelicolor.

Zhou H, Wang Y, Yu Y, Bai T, Chen L, Liu P, Guo H, Zhu C, Tao M, Deng Z

Curr Microbiol,

2012, 64(2):185-90

148

Impact of nitrogen concentration on validamycin A production and related gene transcription in fermentation of Streptomyces hygroscopicus 5008.

Wei ZH, Bai L, Deng Z, Zhong JJ

Bioproc Biosyst Eng,

2012, 35(7):1201-8

147

Temperature shift-induced reactive oxygen species enhanced validamycin A production in fermentation of Streptomyces hygroscopicus 5008.

Wei ZH, Wu H, Bai L, Deng Z, Zhong JJ

Bioproc Biosyst Eng,

2012, 35(8):1309-16

146

Operating conditions optimization for (+)-terrein production in a stirred bioreactor by Aspergillus terreus strain PF-26 from marine sponge Phakellia fusca.

Xu B, Yin Y, Zhang F, Li Z, Wang L

Bioproc Biosyst Eng,

2012, 35(9):1651-1655

145

Jiangxienone, a new compound with potent cytotoxicity against tumor cells from traditional Chinese medicinal mushroom Cordyceps jiangxiensis.

Xiao JH, Sun ZH, Pan WD, Lü YH, Chen DX, Zhong JJ

Chem Biodivers,

2012, 9(7):1349-55

144

Isolation, identification and characterization of an algicidal bacterium from lake Taihu and preliminary studies on its algicidal compounds.

Tian C, Liu X, Tan J, Lin S, Li D, Yang H

J Environ Sci,

2012, 52(9):2422-9

143

Structural characteristics of genomic islands associated with GMP synthases as integration hotspot among sequenced microbial genomes.

Song L, Pan Y, Chen S, Zhang X

Comput Biol Chem,

2012, 36:62-70

142

Detection and quantification of cultured marine Alexandrium species by real-time PCR.

Zhang F, Li Z

World J Microbiol Biotechnol,

2012, 28(12):3255-60

141

Characterisation of the bacterial community in expressed prostatic secretions from patients with chronic prostatitis/chronic pelvic pain syndrome and infertile men: a preliminary investigation.

Hou DS, Long WM, Shen J, Zhao LP, Pang XY, Xu C

Asian J Androl,

2012, 14(4):566-73

140

A pharmacophore model specific to active site of CYP1A2 with a novel molecular modeling explorer and CoMFA

Zhang T, Wei DQ, Chou KC

Med Chem,

2012, 8(2):198-207

139

Molecular dynamics simulations of CYP2E1.

Li J, Wei DQ, Wang JF, Yu ZT, Chou KC

Med Chem,

2012, 8(2):208-21

138

The biosynthesis of the polyether antibiotic nanchangmycin is controlled by two pathway-specific transcriptional activators.

Yu Q, Du A, Liu T, Deng Z, He X

Arch Microbiol,

2012, 194(6):415-26

137

Effect of the termini of RNase Hs from Chlamydophila pneumoniae on enzymatic biochemical characterization

Hou J, Lu Z, Guo X, Liu J.

Acta Biochim Biophys Sin,

2012, 44(10):831-837

136

Alteration of substrate specificities of thermophilic α/β hydrolases through domain swapping and domain interface optimization.

Zhou X, Wang H, Zhang Y, Gao L, Feng Y

Acta Biochim Biophys Sin,

2012, 44(12):965-973

135

Prediction of the functional consequences of single amino-acid substitution in human cytochrome P450

Wang YF, Zhou Q, Dai H, Zhang T, Wei DQ

Mol Simulat,

2012, 38(14-15):12971307

134

Inactivation of the positive LuxR-type oligomycin biosynthesis regulators OlmRI and OlmRII increases avermectin production in Streptomyces avermitilis

Yu Q, Bai LQ, Zhou XF, Deng ZX*

Chinese Sci Bull,

2012, 57(8):869-76

133

Recovery of ganoderic acids from Ganoderma lucidum mycelia by macroporous adsorption resins.

Li YB, Wang JL, Zhong JJ

Biotechnol Bioproc E,

2012, 17(2): 326-336

132

Sensitive determination of barbiturates in biological matrix by capillary electrophoresis using online large-volume sample stacking

Fan LY, He T, Tang YY, Zhang W, Song CJ, Zhao X, Zhao XY, Cao CX

J Forensic Sci,

2012, 24(10):1823-1831

131

Insights into fluorometabolite biosynthesis in Streptomyces cattleya DSM46488 through knockout mutants.

Zhao C, Li P, Deng Z, Ou HY*, McGlinchey RP, O‘Hagan D*

Bioorg Chem,

2012, 44:1-7

130

Car-Parinello molecular dynamics simulations of thionitroxide and S-nitrosothiol in the gas phase, methanol, and waterA theoretical study of S-nitrosylation.

Liang J, Cheng SL, Hou JW, Xu ZH, Zhao YL

Sci China Chem,

2012, 55(10):2081-2088

129

Novel principle and device of acid-base titration via moving neutralization boundary electrophoresis

Wang HY, Yang Q, Dong JY, Zhang W, Fan LY, Zhang WB, Cao CX

Chinese J Anal Chem,

2012, 40(6):968-972

128

Cloning and heterologous expression of the manganese superoxide dismutase gene from Lactobacillus casei Lc18.

Liu Q , Hang X, Liu X , Tan J , Li D ,Yang H

Ann Microbiol,

2012, 62(1):129-137c

127

Ultrahigh-throughput enzymatic screening method based on fluorescence-activated cell sorting and its applications

Ma FQ, Feng Y, Yang GY

Prog Biochem Biophys,

2012, 39(4):299-306

126

Biochemical Characterization of Uracil-DNA Glycosylase from Pyrococcus furiosus.

Lin L, Liu Y, Liu X, Liu J

Chem Res Chinese U,

2012, 28(3):477-482

125

Anti-proliferation and induced mitochondria-mediated apoptosis of ganoderic acid Mk from Ganoderma lucidum mycelia in cervical cancer HeLa cells

Liu RM, Li YB, Zhong JJ

Lat Am J Pharm,

2012, 31(1):43-50

124

Efficient extraction and rapid quantitative determination of nucleoside compounds from Cordyceps jiangxiensis, a new cordyceps producing-cordycepin 

Xiao JH, Sun ZH, Zhang XJ, Xiong Q, Zhong JJ

Lat Am J Pharm,

2012, 31(8):1161-9

123

Genomic analysis of Pseudomonas putida: genes in a genome island are crucial for nicotine degradation

Tang H, Yao Y, Wang L, Yu H, Ren Y, Wu G, Xu P

Sci Rep,

2012, 2:377

122

Spatial distribution of prokaryotic symbionts and ammoxidation, denitrifier bacteria in marine sponge Astrosclera willeyana.

Yang Z, Li Z

Sci Rep,

2012, 2:528

121

Pressure effects on elastic and thermodynamic properties intermetallic compound of Zr3Al

Yuan XL, Wei DQ, Cheng Y, Ji GF, Zhang QM, Gong ZZ

Computational Materials Science ,

2012, 58:125-130

120

The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.

(合作发表)

Gu TP, Guo F, Yang H, Wu HP, Xu GF, Liu W, Xie ZG, Shi L, He X, Jin SG, Iqbal K, Shi YG, Deng Z, Szabó PE, Pfeifer GP, Li J, Xu GL

Nature,

2011, 477(7366):606-610

119

DNA phosphorothioation is wide spread and quantized in bacterial genomes.

(合作发表)

Wang L, Chen S, Vergin KL, Giovannoni SJ, Chan SW, DeMott MS, Taghizadeh K, Cordero OX, Cutler M, Alm EJ, Polz MF, Pinhassi J, Deng Z, Dedon PC

Proc Natl Acad Sci USA,

2011, 108(7):2963-68

118

Free energy calculations on the two drug binding sites in the M2 proton channel.

Gu R, Liu L, Wei D, Du J, Liu L, Liu H

J Am Chem Soc,

2011, 133(28):10817–10825

117

TADB: a web-based resource for Type2 toxin-antitoxin loci in bacteria and archaea

Shao Y, Harrison EM, Bi D, Tai C, He X, Ou HY, Rajakumar K, Deng Z

Nucleic Acids Res,

2011, 39(Database issue):D606-11

116

ASD: a comprehensive data base of allosteric proteins and modulators.

Huang Z, Zhu L, Cao Y, Wu G, Liu X, Chen Y, Wang Q, Shi T, Zhao Y, Wang Y, Li W, Li Y, Chen H, Chen G & Zhang J

Nucleic Acids Res,

 2011, 39(Suppl 1):D663-D669

115

Recent advances in biotechnological production of 2-phenylethanol

Hua D, Xu P

Biotechnol Adv,

2011, 29(6):654-660

114

Biotechnological routes based on lactic acid production from biomass

Gao C, Ma C, Xu P

Biotechnol Adv,

2011, 29(6):930–939

113

Comparative meta genomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries.

Xie W, Wang FP(co-first author), Guo L, Chen Z, Sievert SM, Meng J, Huang G, Li Y, Yan Q, Shan Wu s, Wang X, Chen S, He G, Xiao X and Xu A

ISME J,

2011, 5(3):414–426

112

 

Chen Y, Wang F, Xu JMehmood MA, Xiao X

ISME J,

2011, 5(5):843-855

111

Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers.

Wang T, Cai G, Qiu Y, Fei N, Zhang M, Pang X, Jia W, Cai S and Zhao L

ISME J,

2011, 6(2):320-329

110

Dual carbamoylations on the polyketide and glycosyl moiety by asm21 result in extended ansamitocinbiosynthesis.

Li Y, Zhao P, Kang Q, Ma J, Bai L, Deng Z

Chem Biol,

2011, 18(12):1571-1580

109

Over-expression of UDP-glucose pyrophosphorylase increases validamycin A but decreases validoxylamine A production in Streptomyces hygroscopicus var. jinggangensis5008.

Zhou X, Wu H, Li Z, Zhou X, Bai L, Deng Z

Metab Eng,

2011, 13(6):768-776

108

Bioelectricity enhancement via overexpression of quorum sensing system in Pseudomonas aeruginosa-inoculated microbial fuel cells.

Yong YC, Yu YY, Li CM, Zhong JJ, Song H

Biosens Bioelectron,

2011, 30(1):87-92

107

Identification and characterization of the pyridomycin biosynthetic gene cluster of Streptomyces pyridomyceticus NRRLB-2517

Huang T, Wang Y, Yin J, Du Y, Tao M, Xu J, Chen W, Lin S, Deng Z

J Biol Chem,

2011, 286(23):20648-20657

106

The N-terminal nucleophile serine of cephalosporin acylase executes the second autoproteolytic cleavage and acylpeptide hydrolysis

Yin J, Deng Z, Zhao G, Huang X

J Biol Chem,

2011, 286(27):24476-24486

105

A novel NADH-dependent and FAD-containing hydroxylase is crucial for nicotine degradation by Pseudomonas putida

Tang H, Yao Y, Zhang D, Meng X, Wang L, Yu H, Ma L, Xu P

J Biol Chem,

2011, 286(45):39179–39187

104

Structural basis of agonist selectivity for different AChR subtypes: insights from crystal structures, mutation experiments and molecular simulations.

Gu R, Zhong Y, Wei D

Curr Pharm Design,

2011, 17(7):1652-1662

103

Characterization of the biosynthesis gene cluster for the pyrrole polyether antibiotic calcimycin (A23187) in Streptomyces chartreusis NRRL3882

Wu Q, Liang J, Lin S, Zhou X, Bai L, Deng Z, Wang Z

Antimicrob Agents Ch,

2011, 55(3):974-982

102

Xylitol production from xylose mother liquor: a novel strategy that combines the use of recombinant Bacillus subtilis and Candida maltosa

Cheng H, Wang B, Lv J, Jiang M, Lin S, Deng Z

Microb Cell Fact,

2011, 10:5

101

A novel method to prepare L-arabinose from xylose mother liquor by yeast-mediated biopurification

Cheng H, Wang H, Lv J, Jiang M, Lin S, Deng Z

Microb Cell Fact,

2011, 10:43 

100

 

Lian PWei DQWang JFChou KC

PLoS One,

 2011, 6(4):e18587

99

Regulatory feedback loop of two phz gene clusters through 5'-untranslated regions in Pseudomonas sp. M18.

Li YDu XLu ZJWu DZhao YRen BHuang JHuang XXu YXu Y

PLoS One,

2011, 6(4):e19413

98

Comparison of microbial community compositions of injection and production well samples in a long-term water-flooded petroleum reservoir.

Ren HY, Zhang XJ, Song ZY, Rupert W, Gao GJ, Guo SX, Zhao LP

PLoS One,

2011, 6(8):e23258

97

Molecular basis for the recognition of Adenomatous Polyposis Coli by the Discs Large 1 protein.

Zhang Z, Li H, Chen L, Lu X, Zhang J, Xu P, Lin K, Wu G

PLoS One,

2011, 6(8):e23507

96

Characterization of Family IV UDG from Aeropyrum pernix and its application in hot-start PCR by Family B DNA polymerase

Liu XP, Liu JH

PLoS One,

2011, 6(11):e27248

95

Enhanced production of validamycin A by H2O2-induced reactive oxygen species in fermentation of Streptomyces hygroscopicus 5008.

Wei ZH, Bai L, Deng Z, Zhong JJ

Bioresource Technol,

2011, 102(2):1783-87

94

Enhanced production of ansamitocin P-3 by addition of isobutanol in fermentation of Actinosynnema pretiosum.

Lin J, Bai L, Deng Z, Zhong JJ

Bioresource Technol,

2011, 102(2):1863-68

93

CO2 biofixation and fatty acid composition of Scenedesmus obliquus and Chlorella pyrenoidosa in response to different CO2 levels.

Tang DHan WLi PMiao XZhong J

Bioresource Technol,

2011, 102(3):3071-76

92

Enhanced production of ganoderic acids in static liquid culture of Ganoderma lucidum under nitrogen-limiting conditions.

Zhao W, Xu JW, Zhong JJ

Bioresource Technol,

2011, 102(17):8185-90

91

Significance of oxygen supply in production of a novel antibiotic by Pseudomonas sp.SJT25.

Xu Y, Zhong JJ

Bioresource Technol,

2011, 102(19):9167-74

90

Novel organic solvent-responsive expression vectors for biocatalysis: application for development of an organic solvent-tolerant biodesulfurizing strain.

Tao F, Liu Y, Luo Q, Su F, Xu Y, Li F, Yu B, Ma C, Xu P

Bioresource Technol,

2011, 102(20):9380-7

89

Enhanced production of ansamitocin P-3 by addition of Mg2+ in fermentation of Actinosynnema pretiosum.

Jia Y, Zhong JJ

Bioresource Technol,

2011, 102(21):10147-50

88

Temporal variability of cyanobacterial populations in the water and sediment samples of Lake Taihu as determined by DGGE and real-time PCR.

Ye W, Tan J, Liu X, Lin S, Pan J, Li D, Yang H

Harmful Algae,

2011, 10(5):472–479

87

Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18.

Wu DQ, Ye J, Ou HY, Wei X, Huang X, He YW, Xu Y

BMC Genomics,

2011, 12:438

86

Gene discovery by genome-wide CDS re-prediction and microarray-based transcriptional analysis in phytopathogen Xanthomonas campestris.

Zhou L, Vorholter FJ, He YQ, Jiang BL, Tang JL, Xu Y, Puhler A, He YW

BMC Genomics,

2011, 12(1):359

85

Xanthomonas campestris diffusible factor is 3-hydroxybenzoic acid and associated with xanthomonadin biosynthesis, cell viability, antioxidant activity and systemic invasion.

He YWWu JZhou LYang FHe YQJiang BLBai LXu YDeng ZTang JLZhang LH

Mol Plant Microbe Interact,

2011, 24(8):948-57

84

N-methylation of the amide bond by methyl transferase asm10 in ansamitocin biosynthesis

Wu Y, Kang Q, Shang G, Spiteller P, Carroll B, Yu TW, Su W, Bai L, Floss HG

Chembiochem,

2011, 12(11):1759-66

83

Advances in human cytochrome P450 and personalized medicine.

Chen Q, Zhang T, Wang J We D

Curr Drug Metab,

2011, 12(5):436-444

82

Stacking and determination of phenazine-1-carboxylic acid with low pKa in soil via moving reaction boundary formed by alkaline and double acidic buffers in capillary electrophoresis.

Sun C, Yang XD, Fan LY, Zhang W, Xu YQ, Cao CX

Anal Bioanal Chem,

2011, 399(10):3441-50

81

Cloning and functional analysis of the naphthomycin biosynthetic gene cluster in Streptomyces sp. CS

Wu Y, Kang Q, Shen Y, Su W, Bai L

Mol Biosyst,

2011, 7(78) :2459-69

80

Long-range effects of a peripheral mutation on the enzymatic activity of cytochrome P450 1A2.

Zhang T, Liu L, Lewis D and Wei D

J Chem Inf Model,

2011, 51(6):1336-46 

79

Novel antiphytopathogenic compound 2-heptyl-5-hexylfuran-3-carboxylic acid, produced by newly isolated Pseudomonas sp. strain SJT25.

Wang XY, Xu YQ, Lin SJ, Liu ZZ, Zhong JJ

Appl Environ Microb,

2011, 77(17):6253-57

78

Chemoenzymatic synthesis of N-acetyl-D-neuraminic acid from N-acetyl-D-glucosamine by using the spore surface-displayed N-acetyl-D-neuraminic acid aldolase.

Gao C, Xu X, Zhang X, Che B, Ma C, Qiu J, Tao F, Xu P

Appl Environ Microb,

2011, 77(19):7080-3

77

Complete genome sequence of the obligate piezophilic hyperthermophilic archaeon Pyrococcus yayanosii CH1.

Xu J, Liu LP, Xu MJ, Philippe O, Wang FP, Mohamed J, Xiao X

J Bacteriol,

2011, 193(16):4297-4298

76

Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid.

Su FYu BSun JOu HYZhao BWang LQin JTang HTao FJarek MScharfe MMa CMa YXu P

J Bacteriol,

2011, 193(17):4563-4564

75

Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16.

Yu H, Tang H, Wang L, Yao Y, Wu G, Xu P

J Bacteriol,

2011, 193(19):5541-5542

74

Genome sequence of the thermophilic strain Bacillus coagulans XZL4, an efficient pentose-utilizing producer of chemicals.

Su F, Xu K, Zhao B, Tai C, Tao F, Tang H, Xu P

J Bacteriol,

2011, 193(22):6398-6399

73

Genome sequence of Bacillus pumilus S-1, an efficient isoeugenol-utilizing producer for natural vanillin.

Su F, Hua D, Zhang Z, Wang X, Tang H, Tao F, Tai C, Wu Q, Wu G, Xu P

J Bacteriol,

 2011, 193(22):6400-6401

72

Genome sequence of Sphingobium yanoikuyae XLDN2-5, an efficient carbazole-degrading strain.

Gai Z, Wang X, Tang H, Tai C, Tao F, Wu G, Xu P

J Bacteriol,

2011, 193(22):6404-6405

71

Genome sequence of Serinicoccus profundi, a novel actinomycete isolated from deep-sea sediment

Xiao J, Luo Y, Xu J.

J Bacteriol,

2011, 193(22): 6413

70

Genome sequence of Rhodococcus erythropolis XP, a biodesulfurizing bacterium with industrial potential.

Tao F, Zhao P, Li Q, Su F, Yu B, Ma C, Tang H, Tai C, Wu G, Xu P

J Bacteriol,

2011, 193(22):6422-6423

69

Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds.

Tang H, Yu H, Li Q, Wang X, Gai Z, Yin G, Su F, Tao F, Ma C, Xu P

J Bacteriol,

2011, 193(23):6789-6790

68

Genome sequence of Pseudomonas putida Idaho, a unique organic-solvent-tolerant bacterium.

Tao F, Tang H, Gai Z, Su F, Wang X, He X, Xu P

J Bacteriol,

2011, 193(24):7011-7012

67

Genome sequence of Sphingomonas elodea ATCC 31461, a highly productive industrial strain of gellan gum.

Gai Z, Wang X, Zhang X, Su F, Wang X, Tang H, Tai C, Tao F, Ma C, Xu P

J Bacteriol,

2011, 193(24):7015-7016

66

Comparative study on sample stacking by moving reaction boundary formed with weak acid and weak or strong base in capillary electrophoresis: II. Experiments.

Zhang W, Fan L, Shao J, Li S, Li S, Cao C

Talanta,

2011, 84(2):547-557

65

Comparative study on sample stacking by moving reaction boundary formed with weak acid and weak or strong alkali in capillary electrophoresis: I. Theory.

Cao C, Zhang W, Fan L, Shao J, Li S

Talanta,

2011, 84(3):651-658

64

Quantitative influence of endogenous salicylic acid level on taxuyunnanine C biosynthesis in suspension cultures of Taxus chinensis.

Zhou X, Zhong JJ

Biotechnol Bioeng,

2011, 108(1):216-221

63

Design and construction of improved new vectors for Zymomonas mobilis recombinants.

Dong HW, Bao J, Ryu DD, Zhong JJ

Biotechnol Bioeng,

2011, 108(7):1616-27

62

Equivalence-point electromigration acid-base titration via moving neutralization boundary electrophoresis.

Yang Q, Fan LY, Huang SS, Zhang W, Cao CX

Electrophoresis,

 2011, 32(9):1015-1024

61

Re-assemblable quasi-chip free-flow electrophoresis with simple heating dispersion for rapid micropreparation of trypsin in crude porcine pancreatin.

Geng JZ, Shao J, Yang JH, Pang B, Cao CX, Fan LY

Electrophoresis,

 2011, 32(22):3248-3256

60

Nucleotidylation of unsaturated carbasugar in validamycin biosynthesis

Yang J, Xu H, Zhang Y, Bai L, Deng Z, Mahmud T

Org Biomol Chem,

2011, 9(2):438-49 

59

Iron reduction and magnetite biomineralization mediated by a deep-sea iron-reducing bacterium Shewanella piezotolerans WP3.

Wu WFLi B, Hu J, Li JH, Wang F, Pan YX

J Geophys Res,

 2011, 116(G4)

58

Enhanced production of 2-hydroxyphenazine in Pseudomonas chlororaphis GP72.

Huang LChen MMWang WHu HBPeng HSXu YQZhang XH

Appl Microbiol Biot,

2011, 89(1):169-177

57

Fervidobacterium changbaicum Lip1: identification, cloning, and characterization of the thermophilic lipase as a new member of bacterial lipase family V.

Cai J, Xie Y, Song B, Wang Y, Zhang Z, Feng Y

Appl Microbiol Biot,

2011, 89(5):1463-73

56

GGDEF proteins YeaI, YedQ, and YfiN reduce early biofilm formation and swimming motility in Escherichia coli.

Sanchez-Torres V, Hu H, Wood TK

Appl Microbiol Biot,

2011, 90(2):651-658

55

Intracellular salicylic acid is involved in signal cascade regulating low ammonium induced taxoid biosynthesis in suspension cultures of Taxus chinensis.

Zhou X, Zhong JJ

Appl Microbiol Biot,

2011, 90(3):1027-1036

54

A diverse bacterial community in an anoxic quinoline-degrading bioreactor determined by using pyrosequencing and clone library analysis.

Zhang X, Yue S, Zhong H, Hua W, Chen R, Cao Y, and Zhao L

Appl Microbiol Biot,

2011, 91(2):425-434

53

Quantitative investigation of non-hydrolytic disruptive activity on crystalline cellulose and application to recombinant swollenin.

Wang Y, Tang R, Tao J, Gao G, Wang X, Mu Y, Feng Y

Appl Microbiol Biot,

2011, 91(5):1353-1363

52

Novel positive allosteric modulators of the human α7 nicotinic acetylcholine receptor.

Arias HRGu RXFeuerbach DGuo BBYe YWei DQ

Biochemistry-US,

 2011, 50(23):5263-5278

51

Biomimetic affinity purification of Candida antarctica lipase B

Yao H, Zhang T, Xue H, Tang K, Li R

J Chromatogr B,

2011, 879(32):3896-900 

50

Enrichment of a microbial community performing anaerobic oxidation of methane in a continuous high-pressure bioreactor

Zhang Y, Maignien L, Zhao X, Wang F, Boon N

BMC Microbiol,

2011, 11:137

49

Genetic characterization of enzymes involved in the priming steps of oxytetracycline biosynthesis in Streptomyces rimosus

Wang P, Gao X, Chooi YH, Deng Z, Tang Y

Microbiol-SGM,

2011, 157(8):2401-2409

48

Recovery and phylogenetic diversity of culturable fungi associated with marine sponges Clathrina luteoculcitella and Holoxea sp. in the South China Sea.

Ding, B, Yin, Y, Zhang, FL, Li, ZY

Mar Biotechnol,

2011, 13(4):713-721

47

Distribution and abundance of archaea in South China Sea sponge Holoxea sp. and the presence of ammonia-oxidizing archaea in sponge cells.

Liu F, Han M, Zhang F, Zhang B, Li Z

Evid Based Complement Alternat Med,

2011, 2011:723696

46

Phylogenetically diverse cultivable fungal community and polyketide synthase (PKS), non-ribosomal peptide synthase (NRPS) genes associated with the South China Sea sponges.

Zhou K, Zhang X, Zhang F, Li Z

Microbiol Ecol,

2011, 62(3):644-654

45

Kinetic study of 7-O-ethylganoderic acid O stability and its importance in the preparative isolation.

Wang JL, Li YB, Qin HL, Zhong JJ

Biochem Eng J,

2011, 53(2):182–186

44

Ganoderic acid Mf and S induce mitochondria mediated apoptosis in human cervical carcinoma HeLa cells.

Liu RMZhong JJ

Phytomedicine,

2011, 18(5):349–355

43

p53 is important for the anti-invasion of ganoderic acid T in human carcinoma cells.

Chen NHZhong JJ

Phytomedicine,

2011, 18(8-9):719–725

42

Ganoderic acid Me induces apoptosis through mitochondria dysfunctions in human colon carcinoma cells.

Zhou L, Shi P, Chen NH, Zhong JJ

Process Biochem,

2011, 46(1):219–225

41

Ring-opening polymerization of <epsilon>-caprolactone catalyzed by a novel thermophilic lipase from Fervidobacterium nodosum,

Li QS, Li GQ, Yu SS, Zhang ZM, Ma FQ, Feng Y

Process Biochem,

2011, 46(1):253-257

40

Scale-up study on the fed-batch fermentation of Ganoderma lucidum for the hyperproduction of ganoderic acid and ganoderma polysaccharides.

Tang YJ, Zhang W, Liu RS, Zhu LW, Zhong JJ

Process Biochem,

2011, 46(1):404–408

39

Highly efficient ring-opening polymerization of <epsilon>–caprolactone catalyzed by a recombinant Escherichia coli whole-cell biocatalyst.

Li QS, Li GQ, Ma FQ, Zhang ZM, Zheng BS, Feng Y

Process Biochem,

2011, 46(2):477-481

38

Bacillamide C production by the optimized cultivation of the Bacillus atrophaeus strain C89 associated with the South China Sea sponge Dysidea avara.

Jin LJ, Ma W, Peng CS, Yin Y, Xu BL, Zhang FL, Guo YW, Li ZY

Process Biochem,

2011, 46(5):1153-1159

37

Effects of Ganoderic acid Me on inhibiting multidrug resistance and inducing apoptosis in multidrug resistant colon cancer cells.

Jiang ZJ, Jin TT, Gao F, Liu JW, Zhong JJ, Zhao H

Process Biochem,

2011, 46(6):1307–1314

36

Mid-scale free-flow electrophoresis with gravity-induced uniform flow of background buffer in chamber for the separation of cells and proteins.

Dong YC, Shao J, Yin XY, Fan LY, Cao CX

J Sep Sci,

2011, 34(14):1683-1691

35

Design and synthesis of affinity ligands and relation of their structure with adsorption of proteins.

Ye LXu ACheng CZhang LHuo CHuang FXu HLi R

J Sep Sci,

2011, 34(22):3145–3150

34

Crystal structure of the armadillo repeat domain of adenomatous polyposis coli which reveals its inherent flexibility.

Zhang ZLin KGao LChen LShi XWu G

Biochem Bioph Res Co,

2011, 412(4):732-736

33

In silico prediction of cytochrome P450-mediated drug metabolism.

Zhang T, Chen Q, Li L, Liu LA, Wei DQ

Comb Chem High T Scr,

2011, 14(5):388-95

32

Slow-release formulation of a new biological pesticide, pyoluteorin, with mesoporous silica.

Chen J, Wang W, Xu Y, Zhang X

J Arg Food Chem,

2011, 59 (1):307-311

31

Isolation and purification of a modified phenazine, griseoluteic acid, produced by Streptomyces griseoluteus P510

Wang Y, Luo Q, Zhang X, Wang W

Res Microbiol,

 2011, 162(3):311-319

30

Role of dipole elongation in orientationally ordered liquids

Wei DQGao LZhang JYan LWHu JHChen LGong ZZGuo YXHan Y

Phys Rev E,

 2011, 83(6):061703-061707

29

Revealing the drug-resistant mechanism for diarylpyrimidine analogue inhibitors of HIV-1 reverse transcriptase

Zhang H, Qin F, Ye W, Li Z, Ma S, Xia Y, Jiang Y, Zhu J, Li Y, Zhang J, Chen HF

Chem Biol Drug Des,

2011, 78(3):427-437

28

Extensive in vitro activity of guanidine hydrochloride polymer analogs against antibiotics-resistant clinically isolated strains.

Zhou ZX, Wei DF, Guan Y, Zheng A, Zhong JJ

Mat Sci Eng C-Mater,

2011, 31(8):1836-1843

27

Expansion of the known Klebsiella pneumoniae species gene pool by characterization of novel alien DNA islands integrated into tmRNA gene sites

Zhang J, Jurriaan van Aartsen J, Jiang X, Shao Y, Tai C, He X, Tan Z, Deng Z, Jia S, Rajakumar K, Ou HY

J Microbiol Meth,

2011,84:283-289

26

The first-principles calculations for the elastic properties of Zr2Al under compression

Yuan X, Wei D, Chen X, Zhang Q, Gong Z

J Alloy Compd,

2011, 509(3):769–774

25

Biological active metabolite cyclo (L-Trp-L-Phe) produced by South China Sea sponge Holoxea sp. associated fungus Aspergillus versicolor strain TS08.

Chu D, Peng C, Ding B, Liu F, Zhang F, Lin H, Li Z

Bioproc Biosyst Eng,

2011, 34(2):223-229

24

Vitreous and serum levels of transthyretin (TTR) in high myopia patients are correlated with ocular pathologies.

Shao J, Xin Y, Li R, Fan Y

Clin Biochem,

2011, 44(8-9):681-685

23

Streptomyces indicus sp. nov., an actinomycete isolated from deep-sea sediment.

Luo Y, Xiao J, Wang Y, Xu J, Xie S, Xu J

Int J Syst Evol Micr,

 2011, 61(11):2712-2716

22

Predicting protein-ligand binding sites based on an improved geometric algorithm.

He J, Wei DQ, Wang JF, Chou KC

Protein Peptide Lett,

2011, 18(10):997-1001

21

Free energy calculations and binding analysis of two potential anti- influenza drugs with Polymerase basic protein-2 (PB2).

Lv HM, Guo XL, Gu RX, Wei DQ

Protein Peptide Lett,

2011, 18(10):1002-1009

20

Development of a fluorophore-ribosomal DNA restriction typing method for monitoring structural shifts of microbial communities.

Wang T, Zhang X, Zhang M, Wang L, Zhao L

Arch Microbiol,

2011, 193(5):341–350

19

Stratification of archaeal communities in shallow sediments of the Pearl River Estuary, Southern China.

Jiang L, Zheng Y, Chen J, Xiao X, Wang F

Anton Leeuw Int J G,

2011, 99(4):739-751

18

Molecular characterization of the modular chitin binding protein Cbp50 from Bacillus thuringiensis serovar konkukian.

Mehmood MA, Xiao X, Hafeez F Y, Gai Y, Wang FP

Anton Leeuw Int J G,

2011, 100(3):445-453

17

New cytotoxic metabolites from a deep-sea-derived fungus, Phialocephala sp., strain FL30r.

Li DH, Cai SX, Zhu TJ, Wang FP, Xiao X, Gu QQ

Chem Biodivers,

2011, 8(5):895-901

16

Interactions of biocidal guanidine hydrochloride polymer analogs with model membranes: a comparative biophysical study.

Zhou ZZheng AZhong J

Acta Bioch Bioph Sin,

2011, 43(9):729-737

15

Mutation probability of cytochrome P450 based on a genetic algorithm and support vector machine.

Yao Y, Zhang T, Xiong Y, Li L, Huo J, Wei DQ

Biotechnol J,

2011, 6(11):1367-76

14

Streptomycindole, an indole alkaloid, from a marine Streptomyces sp. DA22 associated with South China Sea sponge Craniella australiensis

Huang XL, GaoY, Xue DQ, Peng CS, Zhang FL, Li ZY, Guo YW

Helv Chim Acta,

2011,94:1838-1842

13

In situ biodiesel production from fast-growing and high oil content Chlorella pyrenoidosa in rice straw hydrolysate.

Li PMiao XLi RZhong J

J Biomed Biotechnol,

2011, 2011:141207

12

Molecular characterization of cold-inducible beta-galactosidase from Arthrobacter sp. ON14 isolated from Antarctica.

Xu K, Tang X, Gai Y, Mehmood M, Xiao X, Wang F

J Microbiol Biotechn,

2011, 21(3):236-242

11

Mesoscopic simulation of aggregate behaviour of fluoropolymers in the TATB-based PBX

Zhang Y, Ji G, Zhao F, Gong Z, Wei D, Chen L, Li W

Mol Simulat,

2011, 37(3):237-242

10

Experimental study on the determination and degradation of pyoluteorin in soil via CE with Soxhlet's Extraction and field-amplified sample stacking.

Dong H, Gao B, Wang W, Fan LY, Xu YQ, Zhang XH, Cao CX

Chromatographia,

2011, 73(5-6):609-12

9

Accurate localization and excision of genomic islands in four strains of Pseudomonas aeruginosa and Pseudomonas fluorescens

Song L, Zhang XH

Chinese Sci Bull,

2011, 56(10):987-995

8

The first-principle studies of the crystal phase transitions: Fd3m-MgAl2O4F4-3m-MgAl2O4

Zhang L, Ji GF, Zhao F, Meng CM, Wei D

Physica B,

2011, 406(3):335-338

7

Influence of the N-terminal peptide on the cocrystallization of a thermophilic endo-β-1,4-glucanase with polysaccharide substrates

Zheng B, Yang W, Wang Y, Lou Z, Feng Y

Acta Crystallogr Sect F Struct Biol Cryst Commun,

2011, 67(10):1218-20

6

Purification, crystallization, and preliminary X-ray analysis of DndE protein from Salmonella enterica serovar Cerro87, which is involved in DNA phosphorothioation.

Chen FK, Lin K, Zhang ZY, Chen LY, Shi XS, Cao CY, Wang ZJ, Liang JD, Deng ZX, Wu G

Acta Crystallogr Sect F Struct Biol Cryst Commun,

2011, 67(11):1440-42

5

Isolation and characterization of a novel Ganoderm a lucidum gene that differentially expressed between shaking culture and liquid static culture.

Xu JW, Zhao W, Zhong JJ

Genes Genom,

 2011, 33(6):645-651

4

A fluorescence-based method for the characterization of amino loading density on the flat surface of functionalized glass tubes

Ye L, Ma G, Zhong C, Yan Y, Pan J, Ma G and Li R

Anal Meth,

2011, 3(11):2524–2528

3

Switch of substrate specificity of hyperthermophilic acylaminoacyl peptidase by combination of protein and solvent engineering.

Liu C, Yang G, Wu L, Tian G, Zhang Z, Feng Y

Protein Cell,

2011, 6: 497-506

2

One-pot bio-synthesis: N-acetyl-d-neuraminic acid production by a powerful engineered whole-cell catalyst.

Tao F, Zhang Y, Ma C, Xu P

Sci Rep,

2011,1:142

1

Synthesis and characteristics of a novel artificial hapten using the copper mercaptide of penicillenic acid from penicillin G for immunoassay of heavy metal ions.

Xu W, Xie P, Fan L, Cao C, Xi T, Zhou P

Sci China Life Sci,

 2011, 54(9):813-821