2024年代表性论文
| 序号 | 论文名称 | 期刊名称 | 通讯作者（全重室成员） |
| 1 | A core microbiome signature as an indicator of health | Cell | 张晨虹 |
| 2 | A non-carboxylative route for the efficient synthesis of central metabolite malonyl-CoA and its derived products | Nature Catalysis | 刘天罡,谭在高 |
| 3 | MASH-Ocean 1.0: Interactive platform for investigating microbial diversity, function, and biogeography with marine metagenomic data | Imeta | 王寅炤 |
| 4 | Artificial spider silk materials: From molecular design, mesoscopic assembly, to macroscopic performances | Advanced Functional Materials | 夏小霞,钱志刚 |
| 5 | Programmable adhesion and morphing of protein hydrogels for underwater robots | Nature Communications | 夏小霞,钱志刚 |
| 6 | A three-level regulatory mechanism of the aldo-keto reductase subfamily AKR12D | Nature Communications | 林双君,戴少波 |
| 7 | Design of a water-soluble transmembrane receptor kinase with intact molecular function by QTY code | Nature Communications | 许平 |
| 8 | Discovery of a Ni2+-dependent heterohexameric metformin hydrolase | Nature Communications | 周宁一 |
| 9 | Making the biochemical conversion of lignocellulose more robust | Trends In Biotechnology | 白凤武 |
| 10 | One-pot diagnostic methods based on CRISPR/Cas and Argonaute nucleases: Strategies and perspectives | Trends In Biotechnology | 冯雁,刘倩 |
| 11 | Dietary modulation of gut microbiota affects susceptibility to drug-induced liver injury | Gut Microbes | 张晨虹 |
| 12 | Identification of an efficient phenanthrene-degrading Pseudarthrobacter sp. L1SW and characterization of its metabolites and catabolic pathway | Journal of Hazardous Materials | 梁如冰 |
| 13 | Development of transcriptional factor-based whole-cell biosensors to monitor and degrade antibiotics using mutant cells obtained via adaptive laboratory evolution | Journal of Hazardous Materials | 肖毅 |
| 14 | Deciphering the triclosan degradation mechanism in Sphingomonas sp. strain YL-JM2C: Implications for wastewater treatment and marine resources | Journal of Hazardous Materials | 许楹 |
| 15 | Anaerobic digestion integrated with microbial electrolysis cell to enhance biogas production and upgrading in situ | Biotechnology Advances | 赵心清 |
| 16 | Multifaceted role of the substrate phosphate group in transketolase catalysis | ACS Catalysis | 戴少波 |
| 17 | Streptomyces-based whole-cell biosensors for detecting diverse cell envelope-targeting antibiotics | Biosensors & Bioelectronics | 康前进,丁伟 |
| 18 | Development of an engineered sugar aminotransferase with simultaneously improved stability and non-natural substrate activity for synthesizing the glucosidase inhibitor valienamine | Engineering | 崔莉 |
| 19 | An endocellulase-triggered NO targeted-release enzyme-prodrug therapy system and its application in ischemia injury | Advanced Healthcare Materials | 杨广宇 |
| 20 | Metabolic engineering of Geobacillus thermoglucosidasius for polymer-grade lactic acid production at high temperature | Bioresource Technology | 许平 |
| 21 | Quantum dot-based light conversion strategy for customized cultivation of microalgae | Bioresource Technology | 缪晓玲 |
| 22 | An unusual aromatase/cyclase programs the formation of the phenyldimethylanthrone framework in anthrabenzoxocinones and fasamycin | Proceedings of The National Academy of Sciences of The United States of America | 瞿旭东 |
| 23 | Divergent molecular assembly and catalytic mechanisms between bacterial and archaeal RNase P in pre-tRNA cleavage | Proceedings of The National Academy of Sciences of The United States of America | 刘昱 |
| 24 | Metal-and photosensitizer-free cross-dehydrogenative coupling through photoinduced energy transfer | Green Chemistry | 林厚文 |
| 25 | Full use of lignocellulosic biomass for efficient synthesis of l-tyrosine and its analogues by engineering microbial consortia | Green Chemistry | 肖毅 |
| 26 | Spatiotemporal organization of functional cargoes by light-switchable condensation in Escherichia coli cells | Jacs Au | 夏小霞,钱志刚 |
| 27 | Yeast9: A consensus genome-scale metabolic model for S. cerevisiae curated by the community | Molecular Systems Biology | 鲁洪中 |
| 28 | Irons differently modulate bacterial guilds for leading to varied efficiencies in simultaneous nitrification and denitrification (SND) within four aerobic bioreactors | Chemosphere | 张晓君 |
| 29 | Thermal activation of Argonaute nuclease enables one-pot multiplex detection of viruses | Sensors and Actuators B-Chemical | 刘倩,冯雁 |
| 30 | Structural and functional characterization of AfsR, an SARP family transcriptional activator of antibiotic biosynthesis in Streptomyces | Plos Biology | 郑舰艇 |
| 31 | The chromatin remodeler Ino80 regulates yeast stress tolerance and cell metabolism through modulating nitrogen catabolite repression | International Journal of Biological Macromolecules | 赵心清 |
| 32 | Structural insights into autoinhibition and activation of defense-associated sirtuin protein | International Journal of Biological Macromolecules | 郑舰艇 |
| 33 | Mn2+-induced structural flexibility enhances the entire catalytic cycle and the cleavage of mismatches in prokaryotic argonaute proteins | Chemical Science | 刘倩 |
| 34 | Synthesis of trehalose by the erythritol-producing yeast Yarrowia lipolytica co-displaying maltooligosyltrehalose synthase and maltooligosyltrehalose trehalohydrolase | Acs Sustainable Chemistry & Engineering | 程海荣 |
| 35 | Engineering of aminotransferase for green biosynthesis of glucosidase inhibitor valienamine in Streptomyces hygroscopicus 5008 | ACS Sustainable Chemistry & Engineering | 崔莉 |
| 36 | Designer protein compartments for microbial metabolic engineering | Current Opinion In Biotechnology | 夏小霞,钱志刚 |
| 37 | Regulatory mechanisms underlying yeast chemical stress response and development of robust strains for bioproduction | Current Opinion In Biotechnology | 赵心清 |
| 38 | Graphormer supervised de Novo protein design method and function validation | Briefings in Bioinformatics | 陈海峰,冯雁 |
| 39 | DeepEnzyme: A robust deep learning model for improved enzyme turnover number prediction by utilizing features of protein 3D-structures | Briefings In Bioinformatics | 鲁洪中 |
| 40 | Cell factory design with advanced metabolic modelling empowered by artificial intelligence | Metabolic Engineering | 鲁洪中 |
| 41 | Discovery of the 1-naphthylamine biodegradation pathway reveals a broad-substrate-spectrum enzyme catalyzing 1-naphthylamine glutamylation | Elife | 周宁一 |
| 42 | Niche-dependent sponge hologenome expression profiles and the host-microbes interplay: A case of the hawaiian demosponge Mycale Grandis | Environmental Microbiome | 李志勇 |
| 43 | Soil properties drive nitrous oxide accumulation patterns by shaping denitrifying bacteriomes | Environmental Microbiome | 张晓君 |
| 44 | Modeling and tracing of polycarbonate (PC) degradation in soil microcosm with a PC microplastics quantification method based on pyrolysis GC-MS | Polymer Degradation and Stability | 周宁一 |
| 45 | Discovery and characterization of the PpqI/R quorum sensing system activated by GacS/A and Hfq in Pseudomonas protegens H78 | Microbiological Research | 黄显清 |
| 46 | The interactive effects of ocean acidification and warming on bioeroding sponge Spheciospongia vesparium microbiome indicated by metatranscriptomics | Microbiological Research | 李志勇 |
| 47 | Novel roles of the greatwall kinase Rim15 in yeast oxidative stress tolerance through mediating antioxidant systems and transcriptional regulation | Antioxidants | 赵心清 |
| 48 | A modular chemoenzymatic cascade strategy for the structure-customized assembly of ganglioside analogs | Communications Chemistry | 杨广宇 |
| 49 | Whole-cell bioconversion systems for efficient synthesis of monolignols from L-tyrosine in Escherichia coli | Journal of Agricultural And Food Chemistry | 肖毅 |
| 50 | Fluxomic, metabolomic, and transcriptomic analyses reveal metabolic responses to phenazine-1-carboxamide synthesized in Pseudomonas chlororaphis | Journal of Agricultural and Food Chemistry | 姚瑞莲,张雪洪 |
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